View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_66 (Length: 227)
Name: NF19973_low_66
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 44944359 - 44944482
Alignment:
| Q |
1 |
tgaattaatggaagaagaagaaaaaagacagacaatgttgcacaaaattagatcctaaaaaggccaaatatatatgttggtagaacaaacaatagctatg |
100 |
Q |
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| T |
44944359 |
tgaattaatggaagaagaagaaaaaagacagacaatgttgcacaaaattagatcctaaaaaggccaa----atatgttggtagaacaaacaataactatg |
44944454 |
T |
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| Q |
101 |
ttctaaggaaatcaattaacacaactaa |
128 |
Q |
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| T |
44944455 |
ttctaaggaaatcaattaacacaactaa |
44944482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 44946046 - 44946089
Alignment:
| Q |
28 |
acagacaatgttgcacaaaattagatcctaaaaaggccaaatat |
71 |
Q |
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||||||||||||||||||||||||| | ||||||| |||||||| |
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| T |
44946046 |
acagacaatgttgcacaaaattagagcataaaaagaccaaatat |
44946089 |
T |
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