View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19973_low_67 (Length: 225)
Name: NF19973_low_67
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_67 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 54959075 - 54959006
Alignment:
| Q |
138 |
ccaaacaggcgaaggtacaaatagaacagcaggcaggctagtattaagcattcacaatcaccccacctgc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54959075 |
ccaaacaggcgaaggtacaaatagaacagcaggcaggctagtattaagcgttcacaatcaccccacctgc |
54959006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 54959182 - 54959097
Alignment:
| Q |
50 |
cacaatgcattttaataagtaacacaaaatataacatgatccaaattgaatttgatatatatataatccaacaagtacacaaattattccaa |
141 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
54959182 |
cacaatgcattttaataagtaacgcaaaatataacatgatccaaattgaatttgata----tataatccaacaagt--acaaattattccaa |
54959097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 54959265 - 54959228
Alignment:
| Q |
16 |
atattctagttaactcatttcattgtaaatcccccaca |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54959265 |
atattctagttaactcatttcattgtaaatcccacaca |
54959228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University