View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_68 (Length: 220)
Name: NF19973_low_68
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 34549657 - 34549840
Alignment:
| Q |
22 |
taggagggacaaaaggagatagttgtaataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctt |
121 |
Q |
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| T |
34549657 |
taggagggacaaaaggagatagttgtaataattcatacctcacaccaaacactcaatcatttattctgtcgttgtatcacttcattaacatcttcatctt |
34549756 |
T |
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| Q |
122 |
tgtcaaatttggtattttctaaataaat-tctataaatacctggagtgtacaagattccttcgtaacaaaaggtcttcatctctg |
205 |
Q |
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| T |
34549757 |
tgtcaaatttagtattttctacataaatctct-tcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctg |
34549840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 34377711 - 34377540
Alignment:
| Q |
34 |
aaggagatagttgtaataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttgg |
133 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34377711 |
aaggagaaagttgtaataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctatgtcaaatttgg |
34377612 |
T |
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| Q |
134 |
tattttctaaataaattctataaatacctggagtgtacaagattccttcgtaacaaaaggtcttcatctctg |
205 |
Q |
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| T |
34377611 |
tatcttctacacaaattctataaatacctggagtgtacaagattccattgtaccaaaaggtcttcatctctg |
34377540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 205
Target Start/End: Complemental strand, 135193 - 135045
Alignment:
| Q |
56 |
atacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctaaataaattctata |
155 |
Q |
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|||||||| ||||| ||| | |||||||||| |||||||||||||| |||||||||||||| | || ||||||||||||||||| |||| ||||| ||| |
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| T |
135193 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcata |
135095 |
T |
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| Q |
156 |
aatacctggagtgtacaagattccttcgtaacaaaaggtcttcatctctg |
205 |
Q |
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|| || ||| ||||| |||||||||||| | ||||||||||||||||||| |
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| T |
135094 |
aagacgtggggtgtataagattccttcgaaccaaaaggtcttcatctctg |
135045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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