View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19973_low_69 (Length: 219)
Name: NF19973_low_69
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_69 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 37227749 - 37227546
Alignment:
| Q |
1 |
ataaatagtcatcaatatagccaattctctggtaagtttgaaggtgaaacctgcttttctgcaagaagggaaacgaaatggnnnnnnnntgaattttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37227749 |
ataaatagtcatcaatatagccaattctctggtaagtttgaaggtgaaacctgcttttctgcaagaagggaaacgaaatggaaaaaaa-tgaattttcat |
37227651 |
T |
|
| Q |
101 |
tgctgtgagtaataagtatgaaaggtaaggctaacacaatgaaacttacctagagggcaagggaacataaactccattttcatctgcaaaattaaaggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37227650 |
tgctgtgagtaataagtatgaaaggtaaggctaacacaatgaaacttacctagagggcaagggaacataaactccattttcatctgcaaaattaaaggaa |
37227551 |
T |
|
| Q |
201 |
taaaa |
205 |
Q |
| |
|
||||| |
|
|
| T |
37227550 |
taaaa |
37227546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 37231241 - 37231038
Alignment:
| Q |
1 |
ataaatagtcatcaatatagccaattctctggtaagtttgaaggtgaaacctgcttttctgcaagaagggaaacgaaatggnnnnnnnntgaattttcat |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37231241 |
ataaatattcatcaatatagccaattctctggtaagtttgaaggtgaaacctgcttttctgcaagaagggaaacgaaatggaaaaaaa-tgaattttcat |
37231143 |
T |
|
| Q |
101 |
tgctgtgagtaataagtatgaaaggtaaggctaacacaatgaaacttacctagagggcaagggaacataaactccattttcatctgcaaaattaaaggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37231142 |
tgctgtgagtaataagtatgaaaggtaaggctaacacaatgaaacttacctagagggcaagggaacataaactccattttcatctgcaaaattaaaggaa |
37231043 |
T |
|
| Q |
201 |
taaaa |
205 |
Q |
| |
|
||||| |
|
|
| T |
37231042 |
taaaa |
37231038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 37222195 - 37222121
Alignment:
| Q |
132 |
taacacaatgaaacttacctagagggcaagggaacataaactccattttcatctgcaaaattaaaggaataaaat |
206 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||||| || ||| ||||| |
|
|
| T |
37222195 |
taacacaataaaacttacctagggggtaagggaacataaaatccattttcatctgcaaaatttaaagaaaaaaat |
37222121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 37216308 - 37216233
Alignment:
| Q |
1 |
ataaatagtcatcaatatagccaattctctggtaagtttgaaggtgaaacctgcttttctgcaagaagggaaacgaaat |
79 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| || ||| ||||| |
|
|
| T |
37216308 |
ataaatagtcatcaatatagccaactctctgataagtttgaaggtgaaac---cttttctgcaagagggaaaaggaaat |
37216233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 37222333 - 37222258
Alignment:
| Q |
1 |
ataaatagtcatcaatatagccaattctctggtaagtttgaaggtgaaacctgcttttctgcaagaagggaaacgaaat |
79 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| || ||| ||||| |
|
|
| T |
37222333 |
ataaatagtcatcaatatagccaactctctgataagtttgaaggtgaaac---cttttctgcaagagggaaaaggaaat |
37222258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 37386421 - 37386464
Alignment:
| Q |
155 |
gggcaagggaacataaactccattttcatctgcaaaattaaagg |
198 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
37386421 |
gggcaagggaacataaactccatttttatctgcaaagttaaagg |
37386464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 37441095 - 37441054
Alignment:
| Q |
155 |
gggcaagggaacataaactccattttcatctgcaaaattaaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
37441095 |
gggcaagggaacataaactccatttttatctgcaaagttaaa |
37441054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 37216165 - 37216107
Alignment:
| Q |
133 |
aacacaatgaaacttacctagagggcaagggaacataaactccattttcatctgcaaaa |
191 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||| || |||| ||||||| ||||||||||| |
|
|
| T |
37216165 |
aacacaataaaacttacttagggggcaagggtacgtaaagtccatttccatctgcaaaa |
37216107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 37309496 - 37309458
Alignment:
| Q |
158 |
caagggaacataaactccattttcatctgcaaaattaaa |
196 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
37309496 |
caagggaacataatctccattttgatctgcaaaattaaa |
37309458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University