View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19973_low_73 (Length: 212)
Name: NF19973_low_73
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_73 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 25604003 - 25604203
Alignment:
| Q |
1 |
tagtgagaatttgccgcttatttgtattgttggtggacccaattctaatgattatgggactagtaggattcttcatcatactattggtgttcctgatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25604003 |
tagtgagaatttgccgcttatttgtattgttggtggacccaattctaatgattatgggactagtaggattcttcatcatactattggtgttcctgatttt |
25604102 |
T |
|
| Q |
101 |
agtcaggagttgaggtgttttcagactgttacttgctttcaggttggttgctaaatttgtcatcttttggtttttgggttgacttgtttaatgatgattt |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25604103 |
agtcaggagttgaggtgttttcaaactgttacttgctttcaggttggttgctaaatttgtcatcttttggtttttgggttgacttgtttaatgatgattt |
25604202 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
25604203 |
t |
25604203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 25623216 - 25623363
Alignment:
| Q |
1 |
tagtgagaatttgccgcttatttgtattgttggtggacccaattctaatgattatgggactagtaggattcttcatcatactattggtgttcctgatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| || || ||||||||||| | || ||||||||||||||||||||||| | | ||||| |
|
|
| T |
25623216 |
tagtgagaatttgccgcttatttgcatcgttggtggacctaactccaatgattatggaagtaacaggattcttcatcatactattggaatatccgatttc |
25623315 |
T |
|
| Q |
101 |
agtcaggagttgaggtgttttcagactgttacttgctttcaggttggt |
148 |
Q |
| |
|
|| || ||||||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
25623316 |
agccaagagttgaagtgttttcaaaccgttacttgctttcaggttggt |
25623363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 5330128 - 5330271
Alignment:
| Q |
1 |
tagtgagaatttgccgcttatttgtattgttggtggacccaattctaatgattatgggactagtaggattcttcatcatactattggtgttcctgatttt |
100 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
5330128 |
tagtgagaatttgccagtgatttgtattgttggtggacctaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgatttt |
5330227 |
T |
|
| Q |
101 |
agtcaggagttgaggtgttttcagactgttacttgctttcaggt |
144 |
Q |
| |
|
|| ||||| | |||||||| |||||||||||||||| |||||| |
|
|
| T |
5330228 |
agccaggaacttaggtgtttccagactgttacttgctatcaggt |
5330271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 20434238 - 20434374
Alignment:
| Q |
1 |
tagtgagaatttgccgcttatttgtattgttggtggacccaattctaatgattatgggactagtaggattcttcatcatactattggtgttcctgatttt |
100 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
20434238 |
tagtgagaatttgccagtgatttgtattgttggtggaccaaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgatttt |
20434337 |
T |
|
| Q |
101 |
agtcaggagttgaggtgttttcagactgttacttgct |
137 |
Q |
| |
|
|| ||||| | |||||||| |||||||||||||||| |
|
|
| T |
20434338 |
agccaggaacttaggtgtttccagactgttacttgct |
20434374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 4624843 - 4624941
Alignment:
| Q |
2 |
agtgagaatttgccgcttatttgtattgttggtggacccaattctaatgattatgggactagtaggattcttcatcatactattggtgttcctgatttt |
100 |
Q |
| |
|
||||| || |||||| | |||||||||||||| ||||| ||||||||||| ||||| |||| || ||||||||||||||||||||| | ||||||||| |
|
|
| T |
4624843 |
agtgaaaacttgccggtgatttgtattgttggaggacctaattctaatgactatggtactaacagaattcttcatcatactattggtttacctgatttt |
4624941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University