View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_77 (Length: 207)
Name: NF19973_low_77
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_77 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 7170511 - 7170665
Alignment:
| Q |
37 |
tgccttgctcgatccttcttcttgtgctgacaagaaaactggcgatgagaatgctcttaagaattcaatccaagctatataaacagtatgaaatgttgaa |
136 |
Q |
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| T |
7170511 |
tgccttgcttgatccttcttcttgtgctcacaagaaaactggcgatgagaatgctcgtaagaattcaatccaagctatgtaaacagtatgaaatgttgaa |
7170610 |
T |
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| Q |
137 |
ttggtgtaaaagtttggtacatatattcatgtagaatttattgaaagctatagat |
191 |
Q |
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| T |
7170611 |
ttggtgtaaaagtttggtacatttattcatttagaatttattgaaagctatagat |
7170665 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 7178969 - 7179046
Alignment:
| Q |
117 |
aaacagtatgaaatgttgaattggtgtaa---aagtttggtacatatattcatgtagaatttattgaaagctatagat |
191 |
Q |
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| T |
7178969 |
aaacattatgaaaagttgaattggtgtaataaaatgttggtacatttattcatttagaatttattgaaagctatagat |
7179046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 14816193 - 14816125
Alignment:
| Q |
41 |
ttgctcgatccttcttcttgtgctgacaagaaaactggcgatgagaatgctcttaagaattcaatccaa |
109 |
Q |
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| T |
14816193 |
ttgcttgatccttcttcttgtgctgataagaaaattggtgatgagaatgcgggtaataattcaatccaa |
14816125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 7173799 - 7173876
Alignment:
| Q |
117 |
aaacagtatgaaatgttgaattggtgtaa---aagtttggtacatatattcatgtagaatttattgaaagctatagat |
191 |
Q |
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| T |
7173799 |
aaacattatgaagtgtttaattggtgtaataaaatgttggtacaattattcatttagaatttattgaaagctatagat |
7173876 |
T |
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Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 23518 - 23586
Alignment:
| Q |
41 |
ttgctcgatccttcttcttgtgctgacaagaaaactggcgatgagaatgctcttaagaattcaatccaa |
109 |
Q |
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| T |
23518 |
ttgcttgatccttcttcttgtgctgataagaaaattggtgatgagaatgcgggtaataattcaatccaa |
23586 |
T |
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