View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_high_14 (Length: 382)
Name: NF19974_high_14
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_high_14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 22 - 382
Target Start/End: Original strand, 14416676 - 14417036
Alignment:
| Q |
22 |
agatgaaggaccttgagtggtagcactagttggagtcccaaaagcagcaaattgggatattggtattgaagaaggccccaaattcaggttactcgagcta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14416676 |
agatgaaggaccttgagtggtagcactagttggagtcccaaaagcagcaaattgggatattggtattgaagaaggccccaaattcaggttactcgagcta |
14416775 |
T |
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| Q |
122 |
ccatttttgccatccaaagtaaaacaagccactttgacctgaaaatgattcttaaaaagtcataaaatcgatgccacaaaaatttgctcaatttatcatg |
221 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
14416776 |
ccatttttgtcatccaaagtaaaacaagccactttgacctgaaaatgattcttaaaaagtcataaaatcgatgccacaaaaatttgcacaattcatcatg |
14416875 |
T |
|
| Q |
222 |
cagaaaataccatagacacccaagaacttgcattcacattatgcttataagaaaatcaacataaattatgtatcactttagagaaatacctttactaatg |
321 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
14416876 |
cagaaaatacaatagacacccaagaacttgcattcacaatatgcttataagaaaatcaacataaattatgtatcacttgagagaaatacctttaccaatg |
14416975 |
T |
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| Q |
322 |
atgcagcaataagcttatcaactacacctccaaaaacatttgaattaggttccactagaga |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14416976 |
atgcagcaataagcttatcaactacacctccaaaaacatttgaattaggttccactagaga |
14417036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 43 - 378
Target Start/End: Original strand, 14426751 - 14427091
Alignment:
| Q |
43 |
agcactagttggagtcccaaaagcagcaaattgggatattggtattgaagaaggccccaaattcaggttactcgagctaccatttttgccatccaaagta |
142 |
Q |
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| T |
14426751 |
agcactagttggagtcctaggagcagcaaattgagatatcgtcattgaagaagaccccaatttcaggttacttgagctacaatttttgccatccaaagta |
14426850 |
T |
|
| Q |
143 |
aaacaagccactttgacctgaaaatgattcttaaaaagtcataaaatcgatgccacaaaaatttgctcaatttatcatgcagaaaataccatagacaccc |
242 |
Q |
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| T |
14426851 |
aaactacccactataacctgaaaatgattcttaaaaagtcat-aaatcggtcccac-aaaatttgctcaattcgtcgtgcagaaaatactatagacaccc |
14426948 |
T |
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| Q |
243 |
aagaacttgcattcacattatgctt----ataagaaaatcaacataaattatgtatcactttagagaaatacctttactaatgatgcagcaataagctta |
338 |
Q |
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|||||||| |||||||||| ||||| | || ||||||||||||||| || ||||| || |||||||||||||||| || ||||| |||||||||||| |
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| T |
14426949 |
aagaacttacattcacattttgctttaaaaaaaaaaaatcaacataaatcatttatcatttgagagaaatacctttacgaaggatgccgcaataagctta |
14427048 |
T |
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| Q |
339 |
t---caactacacctccaaaaacatttgaattaggttccacta |
378 |
Q |
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| T |
14427049 |
tcagcaactacacctcccaaaacgtttaaattaggatccacta |
14427091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 343
Target Start/End: Complemental strand, 4244900 - 4244649
Alignment:
| Q |
90 |
aagaaggccccaaattcaggttactcgagctaccatttttgccatccaaagtaaaacaagccactttgacctgaaaatgattcttaaaaagtcataaaat |
189 |
Q |
| |
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|||||||||| | |||| |||| |||||||| | ||||| ||| ||||||||||| | |||| ||| ||| ||| |||| ||||||||||||||||| |
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| T |
4244900 |
aagaaggcccgactttcaagttattcgagctagccttttttccactcaaagtaaaactacccaccgtgatctgtaaacgattattaaaaagtcataaaat |
4244801 |
T |
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| Q |
190 |
cgatgccacaaaaatttgctcaatttatcatgcagaaaataccatagacacccaagaacttgcattcacattatgcttataagaaaatcaacataaatta |
289 |
Q |
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||||| ||||| |||| ||||| |||||||||||| || || ||||||| || || ||||||| | || || ||| |||||||||||||||| |
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| T |
4244800 |
tgatgcaacaaag-tttgatcaatccttcatgcagaaaaaactatcaacacccattaagttacattcacgatgtgattttaa-aaaatcaacataaattg |
4244703 |
T |
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| Q |
290 |
tgtatcactttagagaaatacctttactaatgatgcagcaataagcttatcaac |
343 |
Q |
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| T |
4244702 |
tttatcatatgagaacaatacctttaccaatgatgccgcaataagcttatcaac |
4244649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 3409671 - 3409833
Alignment:
| Q |
24 |
atgaaggaccttgagtggtagcactagttggagtcccaaaagcagcaaattgggatattggtattgaagaaggccccaaattcaggttactcgagctacc |
123 |
Q |
| |
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||||||| |||||| |||||||| ||||||||||| ||||||||| |||||| ||| | |||||||||||| | |||| |||| |||||||| | |
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| T |
3409671 |
atgaaggcccttgaagggtagcaccgattggagtcccagaagcagcaatttgggacgatggcactgaagaaggcccaattttcaagttattcgagctagc |
3409770 |
T |
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| Q |
124 |
atttttgccatccaaagtaaaacaagccactttgacctgaaaatgattcttaaaaagtcataa |
186 |
Q |
| |
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|| || ||||||||||||||| | |||| ||||||| |||||||| |||| ||||||||| |
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| T |
3409771 |
cttcttaacatccaaagtaaaactacccacagtgacctgtaaatgatttttaataagtcataa |
3409833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 4251466 - 4251292
Alignment:
| Q |
164 |
aaatgattcttaaaaagtcataaaatcgatgccacaaaaatttgctcaatttatcatgcagaaaataccatagacacccaagaacttgcattcacattat |
263 |
Q |
| |
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|||||||||||||||||||||||||| ||||| || ||| |||| ||||| |||||||||||| || || |||||| || || ||||||| | | |
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| T |
4251466 |
aaatgattcttaaaaagtcataaaattgatgcaac-aaagtttgatcaatccttcatgcagaaaaaactatcaccacccataaagttacattcacgatgt |
4251368 |
T |
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| Q |
264 |
gcttataagaaaatcaacataaattatgtatcactttagagaaatacctttactaatgatgcagcaataagcttatca |
341 |
Q |
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|||| || |||||||||||||||| | ||||| || ||| ||||||||||||| ||||| || |||||||||||| |
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| T |
4251367 |
gctttta--aaaatcaacataaattgtatatcatttaagaacgatacctttactaacgatgccgcgataagcttatca |
4251292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 4814171 - 4814069
Alignment:
| Q |
237 |
acacccaagaacttgcattcacattatgcttataagaaaatcaacataaattatgtatcactttagagaaatacctttactaatgatgcagcaataagct |
336 |
Q |
| |
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|||||||| ||||| ||||||||| ||||| ||| |||| |||||||| | | |||| || |||| |||||||||||||||||||| |||||||||| |
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| T |
4814171 |
acacccaataacttacattcacatagtgcttttaa--aaataaacataaagtgtccatcatttgagagcaatacctttactaatgatgctgcaataagct |
4814074 |
T |
|
| Q |
337 |
tatca |
341 |
Q |
| |
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||||| |
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| T |
4814073 |
tatca |
4814069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 4867340 - 4867220
Alignment:
| Q |
220 |
tgcagaaaataccatagacacccaagaacttgcattcacattatgcttataagaaaatcaacataaattatgtatcactttagagaaatacctttactaa |
319 |
Q |
| |
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|||| ||||||| || |||| ||||||||| |||||||||| | | ||| |||||| ||||||||||| ||||| || ||| |||||||||||||| |
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| T |
4867340 |
tgcaaaaaatacaatcaacacacaagaacttacattcacattgcacatttaa-aaaatctacataaattatctatcatttgagaacaatacctttactaa |
4867242 |
T |
|
| Q |
320 |
tgatgcagcaataagcttatca |
341 |
Q |
| |
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|||||| ||||||| ||||||| |
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| T |
4867241 |
tgatgccgcaataaacttatca |
4867220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 4867554 - 4867398
Alignment:
| Q |
22 |
agatgaaggaccttgagtggtagcactagttggagtcccaaaagcagcaaattgggatattggtattgaagaaggccccaaattcaggttactcgagcta |
121 |
Q |
| |
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||||||||| || |||||||| ||| | |||||||| ||||||||| ||| |||||| | || | ||||||||| | | ||||||||| || || | |
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| T |
4867554 |
agatgaaggcccgtgagtggtcgcattggttggagttccaaaagcaacaagttgggacaatgatgctgaagaaggttcatatttcaggttattcaggcca |
4867455 |
T |
|
| Q |
122 |
ccatttttgccatccaaagtaaaacaagccactttgacctgaaaatgattcttaaaa |
178 |
Q |
| |
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|||||||||||||| ||||||| | ||||| ||||||| ||||||||||||||| |
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| T |
4867454 |
ttctttttgccatccaatgtaaaactacccactatgacctggaaatgattcttaaaa |
4867398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 7159144 - 7159076
Alignment:
| Q |
273 |
aaaatcaacataaattatgtatcactttagagaaatacctttactaatgatgcagcaataagcttatca |
341 |
Q |
| |
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||||||||||| |||||| ||||| || ||| ||||||||||| |||||||| ||||||||||||||| |
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| T |
7159144 |
aaaatcaacatgaattatctatcatttgtgagcaatacctttaccaatgatgctgcaataagcttatca |
7159076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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