View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19974_high_15 (Length: 382)

Name: NF19974_high_15
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19974_high_15
NF19974_high_15
[»] chr6 (4 HSPs)
chr6 (1-202)||(29598156-29598365)
chr6 (202-269)||(29598049-29598116)
chr6 (309-374)||(29597986-29598051)
chr6 (158-199)||(33631644-33631685)
[»] chr3 (2 HSPs)
chr3 (118-207)||(52724011-52724099)
chr3 (169-200)||(36108605-36108636)
[»] chr8 (3 HSPs)
chr8 (113-197)||(29907761-29907844)
chr8 (147-199)||(18004129-18004180)
chr8 (132-208)||(20094818-20094893)
[»] chr1 (1 HSPs)
chr1 (113-180)||(17468310-17468376)
[»] chr7 (1 HSPs)
chr7 (157-207)||(1596837-1596887)
[»] chr5 (1 HSPs)
chr5 (158-199)||(19705913-19705954)
[»] chr4 (1 HSPs)
chr4 (158-199)||(31254440-31254481)
[»] chr2 (1 HSPs)
chr2 (158-207)||(1926466-1926515)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 29598365 - 29598156
Alignment:
Q  1 cttcacaatattacgttgaattttgtctcggggtgcaaaaatcgtgcctccaatgcacatccaaacagaggctaagtcttttgagtggggataagttgca 100  Q
    ||||||||||| ||||||||||||| |||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  29598365 cttcacaatatcacgttgaattttgcctcgggatgcaaaaatcatgcctccagtgcacatccaaacagaggctaagtcttttgagtggggataagtggca 29598266  T
Q  101 gttctt-tctct--------ttgttaaagagtcccatgttggataaaagatagtttgacaatatgttttataactgggggcaatcctcaccttataaatc 191  Q
    |||||| | |||        ||||||||||||| ||||| ||||||||||| ||||||||||||  ||||||| ||||||  |||||||||||||||| |    
T  29598265 gttcttctttctttcaacacttgttaaagagtctcatgtcggataaaagatggtttgacaatat-atttataagtgggggtcatcctcaccttataaacc 29598167  T
Q  192 ggttttgtagg 202  Q
    | |||||||||    
T  29598166 gattttgtagg 29598156  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 29598116 - 29598049
Alignment:
Q  202 gcttgttgtattcattccagccttctttcacttctgtaagttaaaatacctacctgttactgtcttga 269  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||| || ||| |||||    
T  29598116 gcttgttgtattcattccgcccttctttcacttctgtaagttaaaatacctaccttttgctgccttga 29598049  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 29598051 - 29597986
Alignment:
Q  309 tgaagaaaaataaggattcattgcaaccatcatggctaatcaaagatcctcctccactttcttctc 374  Q
    |||||||||||||| |||||||||||  ||||||||||||||| ||||||||||||||| ||||||    
T  29598051 tgaagaaaaataagtattcattgcaattatcatggctaatcaacgatcctcctccacttccttctc 29597986  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 33631685 - 33631644
Alignment:
Q  158 tttataactgggggcaatcctcaccttataaatcggttttgt 199  Q
    ||||||| ||||||||||||||||| |||||| |||||||||    
T  33631685 tttataagtgggggcaatcctcaccatataaaccggttttgt 33631644  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 52724099 - 52724011
Alignment:
Q  118 aagagtcccatgttggataaaagatagtttgacaatatgttttataactgggggcaatcctcaccttataaatcggttttgtaggcttgt 207  Q
    ||||||||||  | ||||| |||||| | | ||||||||||| |||| | |||||||||||||||| |||||||| ||||||||| ||||    
T  52724099 aagagtcccacatcggatagaagataatctaacaatatgttt-ataaattggggcaatcctcacctcataaatcgattttgtaggattgt 52724011  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 200
Target Start/End: Original strand, 36108605 - 36108636
Alignment:
Q  169 gggcaatcctcaccttataaatcggttttgta 200  Q
    ||||||||||||||||||||||||||||||||    
T  36108605 gggcaatcctcaccttataaatcggttttgta 36108636  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 29907844 - 29907761
Alignment:
Q  113 tgttaaagagtcccatgttggataaaagatagtttgacaatatgttttataactgggggcaatcctcaccttataaatcggtttt 197  Q
    |||||||||||||||  | |||||| ||||||| ||||||| || ||||||| ||||| |||||||||||| | || ||||||||    
T  29907844 tgttaaagagtcccacatcggataagagatagtctgacaatgtg-tttataagtggggtcaatcctcacctcacaagtcggtttt 29907761  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 18004180 - 18004129
Alignment:
Q  147 tgacaatatgttttataactgggggcaatcctcaccttataaatcggttttgt 199  Q
    ||||||||||||| |||| |||||||||||||||||  |||| ||||||||||    
T  18004180 tgacaatatgttt-ataagtgggggcaatcctcaccccataagtcggttttgt 18004129  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 20094893 - 20094818
Alignment:
Q  132 ggataaaagatagtttgacaatatgttttataactgggggcaatcctcaccttataaatcggttttgtaggcttgtt 208  Q
    ||||||||||| || | ||||||||||| |||  |||||||||||||||||||| ||  ||||||||| || |||||    
T  20094893 ggataaaagatggtcttacaatatgttt-atatgtgggggcaatcctcaccttacaagccggttttgtggggttgtt 20094818  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 17468310 - 17468376
Alignment:
Q  113 tgttaaagagtcccatgttggataaaagatagtttgacaatatgttttataactgggggcaatcctca 180  Q
    |||||||||||||||  | |||||| |||| || |||||||||| ||||||| |||||||||||||||    
T  17468310 tgttaaagagtcccacatcggataagagatggtctgacaatatg-tttataagtgggggcaatcctca 17468376  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 1596837 - 1596887
Alignment:
Q  157 ttttataactgggggcaatcctcaccttataaatcggttttgtaggcttgt 207  Q
    |||||||| |||||||||||||||||||| ||  |||||||||||| ||||    
T  1596837 ttttataagtgggggcaatcctcaccttacaagccggttttgtagggttgt 1596887  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 19705913 - 19705954
Alignment:
Q  158 tttataactgggggcaatcctcaccttataaatcggttttgt 199  Q
    ||||||| |||||||||||||||||||||||  |||||||||    
T  19705913 tttataagtgggggcaatcctcaccttataagccggttttgt 19705954  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 31254481 - 31254440
Alignment:
Q  158 tttataactgggggcaatcctcaccttataaatcggttttgt 199  Q
    ||||||| |||||||||||||||||||| ||| |||||||||    
T  31254481 tttataagtgggggcaatcctcaccttacaaaccggttttgt 31254440  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 1926515 - 1926466
Alignment:
Q  158 tttataactgggggcaatcctcaccttataaatcggttttgtaggcttgt 207  Q
    ||||||| |||||| ||||||||||| | |||||||||||||||| ||||    
T  1926515 tttataagtgggggtaatcctcacctcacaaatcggttttgtaggattgt 1926466  T

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