View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19974_high_22 (Length: 320)
Name: NF19974_high_22
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 136 - 307
Target Start/End: Original strand, 34237533 - 34237701
Alignment:
| Q |
136 |
gctttttaattatactaagctaagaaaacagccacttgaagagttttttaattgcactaaactnnnnnnnncttgttattatgaagccttttaactacgc |
235 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
34237533 |
gctttttaattacactaagctaagaaaacagccacttgaagagatttttaattgcactaaactaaaaaaaacttgttat---gaagccttttaactacgc |
34237629 |
T |
|
| Q |
236 |
tagcttgtaaaaaagaatagatgttggtttatttaaaaatgattaaattgggaacaatattaaggaattagt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34237630 |
tagcttgtaaaaaagaatagatgttggtttatttaaaaatgattaaattgggaacaatattaaggaattagt |
34237701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 34237496 - 34237533
Alignment:
| Q |
52 |
gacagacgtgaaggttttaaaaacaagtataaaacatg |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34237496 |
gacagacgtgaaggttttaaaaacaagtataaaacatg |
34237533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 30860569 - 30860516
Alignment:
| Q |
254 |
agatgttggtttatttaaaaatgattaaattgggaacaatattaaggaattagt |
307 |
Q |
| |
|
|||| |||| |||||||||||||||||||| || | |||||| ||||||||||| |
|
|
| T |
30860569 |
agattttggcttatttaaaaatgattaaatgggtaccaatatcaaggaattagt |
30860516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 4901449 - 4901393
Alignment:
| Q |
251 |
aatagatgttggtttatttaaaaatgattaaattgggaacaatattaaggaattagt |
307 |
Q |
| |
|
||||||||||| |||||| |||| |||| || |||||| ||||||||||||||||| |
|
|
| T |
4901449 |
aatagatgttgccttattttaaaaggattgaactgggaagaatattaaggaattagt |
4901393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University