View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19974_high_24 (Length: 290)

Name: NF19974_high_24
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19974_high_24
NF19974_high_24
[»] chr1 (8 HSPs)
chr1 (21-156)||(34817658-34817793)
chr1 (222-267)||(28739402-28739447)
chr1 (222-267)||(50754748-50754793)
chr1 (221-267)||(9379841-9379887)
chr1 (221-267)||(9884864-9884910)
chr1 (226-267)||(15928163-15928204)
chr1 (220-267)||(6539648-6539695)
chr1 (221-259)||(4579191-4579229)
[»] chr2 (5 HSPs)
chr2 (221-267)||(12918556-12918602)
chr2 (221-267)||(39819086-39819132)
chr2 (222-267)||(7755360-7755405)
chr2 (221-265)||(30610247-30610291)
chr2 (226-267)||(15562232-15562273)
[»] chr5 (4 HSPs)
chr5 (221-267)||(29385374-29385420)
chr5 (221-267)||(1839994-1840040)
chr5 (221-260)||(19417468-19417507)
chr5 (160-194)||(9177967-9178001)
[»] chr7 (4 HSPs)
chr7 (222-267)||(7211884-7211929)
chr7 (222-267)||(17272723-17272768)
chr7 (222-263)||(29681789-29681830)
chr7 (227-267)||(7211987-7212027)
[»] chr6 (1 HSPs)
chr6 (222-263)||(2543836-2543877)
[»] chr3 (4 HSPs)
chr3 (222-267)||(11512411-11512456)
chr3 (221-267)||(20286927-20286973)
chr3 (222-267)||(31342031-31342076)
chr3 (226-262)||(20801112-20801148)
[»] chr4 (3 HSPs)
chr4 (221-267)||(31846880-31846926)
chr4 (223-267)||(31012152-31012196)
chr4 (160-201)||(33380737-33380778)
[»] chr8 (2 HSPs)
chr8 (224-267)||(43465112-43465155)
chr8 (164-201)||(16687519-16687556)
[»] scaffold0110 (1 HSPs)
scaffold0110 (156-193)||(26631-26668)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 34817658 - 34817793
Alignment:
Q  21 acacgttcatgctacagctcataacctcaccggcctcttgtttaatggttgagattttatttcaataaaaagcggcgaccttacaatgtgttgtcatttt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34817658 acacgttcatgctacagctcataacctcaccggcctcttgtttaatggttgagattttatttcaataaaaagcggcgaccttacaatgtgttgccatttt 34817757  T
Q  121 aatatttcattcatctcctatctcatattaaatgtc 156  Q
    ||||||||||||||||||||||||||||||||||||    
T  34817758 aatatttcattcatctcctatctcatattaaatgtc 34817793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 28739447 - 28739402
Alignment:
Q  222 ttggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  28739447 ttggtgacattggccaaccacaatgtcacatgtggcttttttcttt 28739402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 50754748 - 50754793
Alignment:
Q  222 ttggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||    
T  50754748 ttggtgacattggccaaccacaatgtcacatgtggctttcttcttt 50754793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 9379841 - 9379887
Alignment:
Q  221 attggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||| |||||||||| |||||||||||||||||||| ||||||    
T  9379841 attggtgatattggccaaccacaatgtcacatgtggctttcttcttt 9379887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 9884864 - 9884910
Alignment:
Q  221 attggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||||    
T  9884864 attggtgacattggtcaaccacaatgtcacatgtggctttcttcttt 9884910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 15928204 - 15928163
Alignment:
Q  226 tgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  15928204 tgacattggccaaccacaatgtcacatgtggctttcttcttt 15928163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 6539695 - 6539648
Alignment:
Q  220 tattggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    ||||||||||||||| |||| ||||||||||||||| |||| ||||||    
T  6539695 tattggtgacattggtcaaccacaatgtcacatgtgactttcttcttt 6539648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 4579191 - 4579229
Alignment:
Q  221 attggtgacattggccaactacaatgtcacatgtggctt 259  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  4579191 attggtgacattggccaaccacaatgtcacaagtggctt 4579229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 12918556 - 12918602
Alignment:
Q  221 attggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  12918556 attggtgacattggccaaccacaatgtcacatgtggcttttttcttt 12918602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 39819086 - 39819132
Alignment:
Q  221 attggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  39819086 attggtgacattggccaaccacaatgtcacatgtggctttcttcttt 39819132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 7755360 - 7755405
Alignment:
Q  222 ttggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  7755360 ttggtgacattggccaaccacaatgtcacaagtggcttttttcttt 7755405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 30610291 - 30610247
Alignment:
Q  221 attggtgacattggccaactacaatgtcacatgtggcttttttct 265  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||    
T  30610291 attggtgacattggccaaccataatgtcacatgtgacttttttct 30610247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 15562232 - 15562273
Alignment:
Q  226 tgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||||||||| ||||||||||||||| |||| ||||||    
T  15562232 tgacattggccaaccacaatgtcacatgtgactttcttcttt 15562273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 29385420 - 29385374
Alignment:
Q  221 attggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  29385420 attggtgacattggccaaccacaatgtcacatgtggctttcttcttt 29385374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 1839994 - 1840040
Alignment:
Q  221 attggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||||    
T  1839994 attgatgacattggccaaccacaatgtcacatgtggctttcttcttt 1840040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 19417468 - 19417507
Alignment:
Q  221 attggtgacattggccaactacaatgtcacatgtggcttt 260  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  19417468 attggtgacattggtcaactacaatgtcacatgtgacttt 19417507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 9178001 - 9177967
Alignment:
Q  160 tagcacttggatgacattgtgattggtgatattgg 194  Q
    ||||||||||||||||||||| |||||||||||||    
T  9178001 tagcacttggatgacattgtggttggtgatattgg 9177967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 7211884 - 7211929
Alignment:
Q  222 ttggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||    
T  7211884 ttggtgacattggccaaccacaatgtcacatgtggctttcttcttt 7211929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 17272723 - 17272768
Alignment:
Q  222 ttggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||    
T  17272723 ttggtgacattggccaaccacaatgtcacatgtggctttcttcttt 17272768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 29681789 - 29681830
Alignment:
Q  222 ttggtgacattggccaactacaatgtcacatgtggctttttt 263  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  29681789 ttggtgacattggccaaccacaacgtcacatgtggctttttt 29681830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 7212027 - 7211987
Alignment:
Q  227 gacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  7212027 gacattggccaaccacaatgtcacatgtgactttcttcttt 7211987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 2543877 - 2543836
Alignment:
Q  222 ttggtgacattggccaactacaatgtcacatgtggctttttt 263  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  2543877 ttggtgacattggccaaccacaatgtcacatgtggctttttt 2543836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 11512411 - 11512456
Alignment:
Q  222 ttggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||    
T  11512411 ttggtgacattggccaaccacaatgtcacatgtggctttcttcttt 11512456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 20286927 - 20286973
Alignment:
Q  221 attggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||||    
T  20286927 attgatgacattggccaaccacaatgtcacatgtggctttcttcttt 20286973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 31342031 - 31342076
Alignment:
Q  222 ttggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||||    
T  31342031 ttggtgacattggccaaccacaatgtcacatgtagctttcttcttt 31342076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 20801148 - 20801112
Alignment:
Q  226 tgacattggccaactacaatgtcacatgtggcttttt 262  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  20801148 tgacattgcccaactacaatgtaacatgtggcttttt 20801112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 31846926 - 31846880
Alignment:
Q  221 attggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||| |||||||||| |||||||||||||||||||| ||||||    
T  31846926 attggtgatattggccaaccacaatgtcacatgtggctttcttcttt 31846880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 31012152 - 31012196
Alignment:
Q  223 tggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||    
T  31012152 tggtgacattgaccaaccacaatgtcacatgtgacttttttcttt 31012196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 33380778 - 33380737
Alignment:
Q  160 tagcacttggatgacattgtgattggtgatattggtaacatt 201  Q
    ||||||||||||||||||||| ||||||||||| || |||||    
T  33380778 tagcacttggatgacattgtggttggtgatatttgtgacatt 33380737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 43465112 - 43465155
Alignment:
Q  224 ggtgacattggccaactacaatgtcacatgtggcttttttcttt 267  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||    
T  43465112 ggtgacattggccaaccacaatatcacatgtggctttcttcttt 43465155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 16687519 - 16687556
Alignment:
Q  164 acttggatgacattgtgattggtgatattggtaacatt 201  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  16687519 acttggatgacattgtggttggtgatattggtgacatt 16687556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 26668 - 26631
Alignment:
Q  156 cggatagcacttggatgacattgtgattggtgatattg 193  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  26668 cggataacacttggatgacattgtggttggtgatattg 26631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University