View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_high_27 (Length: 281)
Name: NF19974_high_27
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 31203779 - 31204037
Alignment:
| Q |
8 |
cgaagaatatacaaaacatgttctacttcgtcttcattagcctttggaaagaagcagttgaaaccatttgaaagacatgttctaaaatatttttgtcaaa |
107 |
Q |
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| T |
31203779 |
cgaacaatacacaaaacatgttctacttcgtcttcattagcctttggaaagaagcagttgaaaccatttgaaagacatgttctaaaatatttttgtcaaa |
31203878 |
T |
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| Q |
108 |
catgttaccatcaagatgcaagaacaaacccttcttaacacaaatggttccatttccagcaataattaaccacttttcaatcaaataaggcgtaaagcgt |
207 |
Q |
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| T |
31203879 |
catgttaccatcaagatgcaagaacaaacccttcttaatacaaatggttccatttccagcaataattaaccacttttcaatcaaataaggcgtaaagcgt |
31203978 |
T |
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| Q |
208 |
agtatgtaagttagagattcttaggaggacatggggaaataacaattaccaaggtaact |
266 |
Q |
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| T |
31203979 |
agtatgtaagttatagattcttaggaggacatggggaaataacaattaccaaggtaact |
31204037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 40 - 246
Target Start/End: Original strand, 31216447 - 31216645
Alignment:
| Q |
40 |
ttcattagcctttggaaagaagcagttgaaaccatttgaaagacatgttctaaaatatttttgtcaaacatgttaccatcaagatgcaagaacaaaccct |
139 |
Q |
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| T |
31216447 |
ttcattagcctttggaaagaagcaggtgaaaccttttgaaaaacatgttctgaaatatttttgtcaaacatgttaccctcaagatgcaagaac-aaccct |
31216545 |
T |
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| Q |
140 |
tcttaacacaaatggttccatttccagcaataattaaccacttttcaatcaaataaggcgtaaagcgtagtatgtaagttagagattcttaggaggacat |
239 |
Q |
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| T |
31216546 |
tcttgacacaaatggttccatttccagcaataattaaccacttttcaatcaaa-------tagagcatagtatgtaagttatagattcttcggaagatat |
31216638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 31216313 - 31216442
Alignment:
| Q |
40 |
ttcattagcctttggaaagaagcagttgaaaccatttgaaagacatgttctaaaatatttttgtcaaacatgttaccatcaagatgcaagaacaaaccct |
139 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||| | ||||||||||||||| |||||| |
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| T |
31216313 |
ttcattagcctttggaaagaagcaggtgaaaccttttgaaaaacatgttctgaaatatttttgtcaaacatgttatcctcaagatgcaagaac-aaccct |
31216411 |
T |
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| Q |
140 |
tcttaacacaaatggttccatttccagcaat |
170 |
Q |
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| T |
31216412 |
tcttgacacaaatggttccatttccagcaat |
31216442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 31217081 - 31217137
Alignment:
| Q |
139 |
ttcttaacacaaatggttccatttccagcaataattaaccacttttcaatcaaataa |
195 |
Q |
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| T |
31217081 |
ttcttgacacaaatggttctatttccagcaacacttaaccagttatcaatcaaataa |
31217137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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