View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_high_3 (Length: 536)
Name: NF19974_high_3
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 14182686 - 14183138
Alignment:
| Q |
1 |
tgtatcgatttcctaacg-attgattgaggtaggtgatgttggaatgtcatatgacgatgtttttacatcctctctactgacttcggcacttgaagatgt |
99 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14182686 |
tgtatcgatttcctaacggattgatcgaggtaggtgatgttggaatgtcagatgatgatgtttttacatcctctctactgacttcggcacttgaagatgt |
14182785 |
T |
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| Q |
100 |
ttacgtgaggttgttttctggtcgtaatcgctatgtttctctcaccagtacgaaggttcatgaacattatgttcaatacattcttcaggctgtgactttc |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14182786 |
ttacgtgaggttgttttctggtcg------ctatgtttctctcaccagcacgaaggttcatgaacattatgttcaatacattctctaggctgtgactttc |
14182879 |
T |
|
| Q |
200 |
ggtagagcgtcagttatatacacgtctcgtcgagctactacgcaaagctggttggaggattacctagagttgccgccgggaaagaagatggaattcggtt |
299 |
Q |
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| T |
14182880 |
ggtagagcgtcagttatatacacgtctcgtcgagctactgcgcaaagctgattgaaggattaccttgagttgccgccgggatagaagatggaattcggtt |
14182979 |
T |
|
| Q |
300 |
cttttgttgcaaagaagaccaacgatctaaggtcggccggctcttattagcttatcagctggtaacagggtcttgatatataggttgagtgactttgctt |
399 |
Q |
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|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14182980 |
cttttgttgcaaagaagaccaacgatctaaggccgaccgactcttattagcttatcagctggtaacagggtcttgatatataggttgagtgactttgttt |
14183079 |
T |
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| Q |
400 |
caaatgatgcaccgaatttgtggcctgttctggatggagatagacatgttctgcttggt |
458 |
Q |
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| T |
14183080 |
caaatgatgcaccgattttgtggtctgttctggatggagatagacatgttctgtttggt |
14183138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 14178836 - 14179281
Alignment:
| Q |
1 |
tgtatcgatttcctaacg-attgattgaggtaggtgatgttggaatgtcatatgacgatgtttttacatcctctctactgacttcggcacttgaagatgt |
99 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
14178836 |
tgtatcgatttcctaacggattgatcgaggtaggtgatgttggaatgtcagatgacgatatttttacatcctctctactgactttggcacttgaagatgt |
14178935 |
T |
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| Q |
100 |
ttacgtgaggttgttttctggtcgtaatcgctatgtttctctcaccagtacgaaggttcatgaacattatgttcaatacattcttcaggctgtgactttc |
199 |
Q |
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| T |
14178936 |
ttacgtgaggttgttttctgttcg------ctatgtttctctcaccagtacgaaggttcatgtacattatgtttaatacattctccaggctgcgactttc |
14179029 |
T |
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| Q |
200 |
ggtagagcgtcagttatatacacgtctcgtcgagctactacgcaaagctggttggaggattacctagagttgccgccgggaaagaagatggaattcggtt |
299 |
Q |
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| T |
14179030 |
ggtagagcgtcagttatatacatgtctcgtcgagctactgcgcaaagctggttggaggattaacttgagttgccgccgggtaagaagatggacttcggtt |
14179129 |
T |
|
| Q |
300 |
cttttgttgcaaagaagaccaacgatctaaggtcggccggctcttattagcttatcagctggtaacagggtcttgatatataggttgagtgactttgctt |
399 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
14179130 |
cttttgttgcaaagaagaccaacgatctaaggccggccgactcttattagcttatcagttggtaacagggtcttgatatataggttgagtgaccttgctt |
14179229 |
T |
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| Q |
400 |
caaatgatgcaccgaatttgtggcctgttctggatggagatagacatgttct |
451 |
Q |
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| T |
14179230 |
caaatgatgcatcgaatttgtggtctgttctggatggagatagacatgttct |
14179281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 14185073 - 14185252
Alignment:
| Q |
1 |
tgtatcgatttcctaacg-attgattgaggtaggtgatgttggaatgtcatatgacgatgtttttacatcctctctactgacttcggcacttgaagatgt |
99 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14185073 |
tgtatcgatttcctaacggattgatcgaggtaggtgatgttggaatgtcagatgacgatgtttttacatcctctctactgacttcggcacttgaagatgt |
14185172 |
T |
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| Q |
100 |
ttacgtgaggttgttttctggtcgtaatcgctatgtttctctcaccagtacgaaggttcatgaacattatgttcaataca |
179 |
Q |
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| T |
14185173 |
ttacgtgaggctgttttctggtcgtaatcgctatgtttctctcaccagtactaatgttcatgaacattatgttcaataca |
14185252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 521
Target Start/End: Original strand, 14181387 - 14181455
Alignment:
| Q |
453 |
cttggtttgtattcaaacttcgaccaagtagcctggggctggtcaggtcgtctagttagctgcgctttc |
521 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |
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| T |
14181387 |
cttggtttgcattcaaacttcgaccaagtagccttcggctggtcaggtcgtccagtttactgcgctttc |
14181455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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