View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19974_high_32 (Length: 256)

Name: NF19974_high_32
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19974_high_32
NF19974_high_32
[»] chr3 (10 HSPs)
chr3 (83-218)||(42375096-42375232)
chr3 (83-218)||(42403810-42403946)
chr3 (83-207)||(26066865-26066989)
chr3 (84-207)||(12007176-12007300)
chr3 (16-78)||(42374999-42375060)
chr3 (16-78)||(42403713-42403774)
chr3 (16-78)||(12007337-12007398)
chr3 (83-207)||(52275651-52275776)
chr3 (89-160)||(15279990-15280061)
chr3 (89-207)||(54760435-54760553)
[»] chr8 (7 HSPs)
chr8 (83-218)||(37741956-37742091)
chr8 (83-207)||(44843227-44843351)
chr8 (133-218)||(28130785-28130867)
chr8 (83-155)||(28130712-28130784)
chr8 (16-78)||(28130614-28130676)
chr8 (16-78)||(44843130-44843191)
chr8 (16-78)||(37742127-37742188)
[»] chr5 (5 HSPs)
chr5 (83-207)||(20407602-20407726)
chr5 (16-78)||(20407504-20407566)
chr5 (179-207)||(125614-125642)
chr5 (179-207)||(20405091-20405119)
chr5 (179-207)||(34992321-34992349)
[»] chr4 (4 HSPs)
chr4 (83-207)||(36040718-36040842)
chr4 (16-78)||(36040624-36040685)
chr4 (179-207)||(37082660-37082688)
chr4 (179-207)||(54959905-54959933)
[»] chr2 (5 HSPs)
chr2 (83-207)||(13098281-13098405)
chr2 (83-207)||(29609060-29609184)
chr2 (16-78)||(13098441-13098502)
chr2 (20-78)||(29608967-29609024)
chr2 (141-210)||(1074221-1074290)
[»] chr1 (15 HSPs)
chr1 (83-207)||(7733592-7733716)
chr1 (83-207)||(37381558-37381682)
chr1 (86-207)||(50985602-50985723)
chr1 (83-207)||(11166862-11166986)
chr1 (83-207)||(41767815-41767939)
chr1 (83-207)||(46387918-46388042)
chr1 (83-205)||(4297246-4297368)
chr1 (83-207)||(7698846-7698968)
chr1 (16-78)||(11166765-11166826)
chr1 (16-78)||(37381718-37381779)
chr1 (16-78)||(41767975-41768036)
chr1 (16-78)||(46387821-46387882)
chr1 (16-78)||(50985756-50985817)
chr1 (16-78)||(4297149-4297210)
chr1 (179-207)||(41771187-41771215)
[»] chr7 (5 HSPs)
chr7 (92-207)||(29054603-29054718)
chr7 (83-198)||(46373430-46373541)
chr7 (16-78)||(46373333-46373394)
chr7 (179-207)||(34346801-34346829)
chr7 (179-207)||(46369670-46369698)
[»] chr6 (4 HSPs)
chr6 (83-207)||(18273116-18273240)
chr6 (16-78)||(18273019-18273080)
chr6 (89-207)||(5325873-5325991)
chr6 (179-207)||(30698603-30698631)
[»] scaffold2013 (1 HSPs)
scaffold2013 (179-207)||(730-758)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 42375096 - 42375232
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42375096 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 42375195  T
Q  183 cacaacatcttctcttcttatatt-attaagagagat 218  Q
    |||||||||||||||||||||||| ||||||||||||    
T  42375196 cacaacatcttctcttcttatattaattaagagagat 42375232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 42403810 - 42403946
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42403810 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 42403909  T
Q  183 cacaacatcttctcttcttatatt-attaagagagat 218  Q
    |||||||||||||||||||||||| ||||||||||||    
T  42403910 cacaacatcttctcttcttatattaattaagagagat 42403946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 26066865 - 26066989
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26066865 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 26066964  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  26066965 cacaacatcttctcttcttatatta 26066989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 12007300 - 12007176
Alignment:
Q  84 aattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  12007300 aattgtggtaatttggttgaataaagtaagttaaaagacagattttaccattactttggtgatttgtcaattaaccaggttggggcatgaataggatttc 12007201  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  12007200 cacaacatcttctcttcttatatta 12007176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 42374999 - 42375060
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42374999 atcggatttatttagttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 42375060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 42403713 - 42403774
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42403713 atcggatttatttagttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 42403774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 12007398 - 12007337
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12007398 atcggatttatttagttgacatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 12007337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 52275776 - 52275651
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaatt-aaccaggctggggcattaataggattt 181  Q
    |||||||||| |||| ||| |||||||||| ||  |||||  ||||||||| | ||  |||||||| |||   ||||||  ||||| | ||||||| |||    
T  52275776 taattgtggtcatttagttcaataaagtaattttcagacaacttttaccctcaattgtgtgatttggcaagccaaccagcttggggtaataataggtttt 52275677  T
Q  182 ccacaacatcttctcttcttatatta 207  Q
    ||||||||||||||||||||||||||    
T  52275676 ccacaacatcttctcttcttatatta 52275651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 15279990 - 15280061
Alignment:
Q  89 tggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccag 160  Q
    |||| |||||||||| |||||||| ||| |||||| ||||||| |||  ||| |||||||||||| ||||||    
T  15279990 tggttatttggttgattaaagtaatttatagacagcttttacctttaacttgctgatttgtcaataaaccag 15280061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 54760553 - 54760435
Alignment:
Q  89 tggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaac 188  Q
    |||| |||| ||| |||||||||| || | ||||  ||||||||| | ||  ||||||||||||  |||| |  | ||| | ||||||  ||||||||||    
T  54760553 tggtcatttagttcaataaagtaattttaggacaacttttaccctcaattatgtgatttgtcaaccaaccggcatagggtaataatagattttccacaac 54760454  T
Q  189 atcttctcttcttatatta 207  Q
    |||||||||||||||||||    
T  54760453 atcttctcttcttatatta 54760435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 37742091 - 37741956
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37742091 taattgtggtaatttagttgaataaagtaagttaaagacagattttacctttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 37741992  T
Q  183 cacaacatcttctcttcttatattattaagagagat 218  Q
    ||||||||||||||||||||||||||||||||||||    
T  37741991 cacaacatcttctcttcttatattattaagagagat 37741956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 44843227 - 44843351
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44843227 taattgttgtaatttggttgaataaagtaagttaaagacaaattttacccttactttggtgatttgtcaattaaccaggttggggcattaataggatttc 44843326  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  44843327 cacaacatcttctcttcttatatta 44843351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 28130785 - 28130867
Alignment:
Q  133 ttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattattaagagagat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  28130785 ttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttctt---ttattaagagagat 28130867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 28130712 - 28130784
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaatta 155  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  28130712 taattgtggtaatttggttgaataaagtaagttaaagcgagattttacccttactttggtgatttgtcaatta 28130784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 28130614 - 28130676
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28130614 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 28130676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 44843130 - 44843191
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44843130 atcggatttatttagttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 44843191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 37742188 - 37742127
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  37742188 atcggatttatttaggtggcatcaaatgaaaatga-ttttatgaagagcaaatgaactaaact 37742127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 20407602 - 20407726
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20407602 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 20407701  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  20407702 cacaacatcttctcttcttatatta 20407726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 20407504 - 20407566
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20407504 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 20407566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 125614 - 125642
Alignment:
Q  179 tttccacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||||||    
T  125614 tttccacaacatcttctcttcttatatta 125642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 20405091 - 20405119
Alignment:
Q  179 tttccacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||||||    
T  20405091 tttccacaacatcttctcttcttatatta 20405119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 34992349 - 34992321
Alignment:
Q  179 tttccacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||||||    
T  34992349 tttccacaacatcttctcttcttatatta 34992321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 36040718 - 36040842
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36040718 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 36040817  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  36040818 cacaacatcttctcttcttatatta 36040842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 36040624 - 36040685
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36040624 atcggatttatttagttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 36040685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 37082688 - 37082660
Alignment:
Q  179 tttccacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||||||    
T  37082688 tttccacaacatcttctcttcttatatta 37082660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 54959933 - 54959905
Alignment:
Q  179 tttccacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||||||    
T  54959933 tttccacaacatcttctcttcttatatta 54959905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 13098405 - 13098281
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13098405 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 13098306  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  13098305 cacaacatcttctcttcttatatta 13098281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 29609060 - 29609184
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29609060 taattgtggtaatttggttgaataaagtaagttaaagacaaattttacccttactttggtgatttgtcaattaactaggctggggcattaataggatttc 29609159  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  29609160 cacaacatcttctcttcttatatta 29609184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 13098502 - 13098441
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  13098502 atcggatttatttagttggcatcaaatgggaatgac-tttatgaagagcaaatgaactaaact 13098441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 29608967 - 29609024
Alignment:
Q  20 gatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29608967 gatttattttgttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 29609024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 1074290 - 1074221
Alignment:
Q  141 gtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattatta 210  Q
    ||||||||||||  ||||||  | ||| | ||||||  ||||||||||||||||||||||||||||||||    
T  1074290 gtgatttgtcaaccaaccagcatagggtaataatagattttccacaacatcttctcttcttatattatta 1074221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 7733592 - 7733716
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7733592 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 7733691  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  7733692 cacaacatcttctcttcttatatta 7733716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 37381682 - 37381558
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37381682 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 37381583  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  37381582 cacaacatcttctcttcttatatta 37381558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 50985723 - 50985602
Alignment:
Q  86 ttgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccac 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50985723 ttgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccac 50985624  T
Q  186 aacatcttctcttcttatatta 207  Q
    ||||||||||||||||||||||    
T  50985623 aacatcttctcttcttatatta 50985602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 11166862 - 11166986
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11166862 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaatcaggctggggcattaataggatttc 11166961  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  11166962 cacaacatcttctcttcttatatta 11166986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 41767939 - 41767815
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41767939 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 41767840  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||| ||||||||||||||||    
T  41767839 cacaacattttctcttcttatatta 41767815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 46387918 - 46388042
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46387918 taattgtggtaatttggttgaataaagtaagttaaagacaaattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 46388017  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  46388018 cacaacatcttctcttcttatatta 46388042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 4297246 - 4297368
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4297246 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccagactggggcattaataggatttc 4297345  T
Q  183 cacaacatcttctcttcttatat 205  Q
    |||||||||||||||||||||||    
T  4297346 cacaacatcttctcttcttatat 4297368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 7698968 - 7698846
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  7698968 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttacttt-gtgatttgtcaattaaccaggctggggcattaatagga-ttc 7698871  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||    
T  7698870 cacaacatcttctcttcttatatta 7698846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 11166765 - 11166826
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11166765 atcggatttatttagttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 11166826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 37381779 - 37381718
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37381779 atcggatttatttagttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 37381718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 41768036 - 41767975
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41768036 atcggatttatttagttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 41767975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 46387821 - 46387882
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46387821 atcggatttatttagttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 46387882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 50985817 - 50985756
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50985817 atcggatttatttagttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 50985756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 4297149 - 4297210
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  4297149 atcggatttatttagttggcatcaaatgtaaatgac-tttatgaagagcaaatgaactaaact 4297210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 41771215 - 41771187
Alignment:
Q  179 tttccacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||||||    
T  41771215 tttccacaacatcttctcttcttatatta 41771187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 29054603 - 29054718
Alignment:
Q  92 taatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29054603 taatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatc 29054702  T
Q  192 ttctcttcttatatta 207  Q
    ||||||||||||||||    
T  29054703 ttctcttcttatatta 29054718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 46373430 - 46373541
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||    
T  46373430 taattgtggtaatttgtttgaataaagtaagttaaagacagattttaccctt----tggtgatttgtcaattaaccaggttggggcattaataggatttc 46373525  T
Q  183 cacaacatcttctctt 198  Q
    ||||||||||||||||    
T  46373526 cacaacatcttctctt 46373541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 46373333 - 46373394
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46373333 atcggatttatttagttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 46373394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 34346801 - 34346829
Alignment:
Q  179 tttccacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||||||    
T  34346801 tttccacaacatcttctcttcttatatta 34346829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 46369670 - 46369698
Alignment:
Q  179 tttccacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||||||    
T  46369670 tttccacaacatcttctcttcttatatta 46369698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 18273116 - 18273240
Alignment:
Q  83 taattgtggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttc 182  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||  || ||||||||| |||||    
T  18273116 taattgtggtaatttggttgaataaagtaaattaaagacagattttacccttactttgatgatttgtcaattaaccaagccaggacattaatagaatttc 18273215  T
Q  183 cacaacatcttctcttcttatatta 207  Q
    ||||||||||| |||| ||||||||    
T  18273216 cacaacatcttatctttttatatta 18273240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 18273019 - 18273080
Alignment:
Q  16 atcggatttatttagttggcatcaaatggaaatgacttttatgaagagcaaatgaactaaact 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18273019 atcggatttatttagttggcatcaaatggaaatgac-tttatgaagagcaaatgaactaaact 18273080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 5325991 - 5325873
Alignment:
Q  89 tggtaatttggttgaataaagtaagttaaagacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaac 188  Q
    |||| |||| ||| |||||||||| || | ||||  ||||||||| | ||  ||||||||||||  |||| |  | ||| | ||||||  ||||||||||    
T  5325991 tggtcatttagttcaataaagtaattttaggacaacttttaccctcaattatgtgatttgtcaaccaaccggcatagggtaataatagattttccacaac 5325892  T
Q  189 atcttctcttcttatatta 207  Q
    |||||||||||||||||||    
T  5325891 atcttctcttcttatatta 5325873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 30698603 - 30698631
Alignment:
Q  179 tttccacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||||||    
T  30698603 tttccacaacatcttctcttcttatatta 30698631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 758 - 730
Alignment:
Q  179 tttccacaacatcttctcttcttatatta 207  Q
    |||||||||||||||||||||||||||||    
T  758 tttccacaacatcttctcttcttatatta 730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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