View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_high_36 (Length: 250)
Name: NF19974_high_36
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_high_36 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 11027631 - 11027865
Alignment:
| Q |
16 |
atcttgttaacctacaaatctcaggttttgtgccttctcatcagatggaaaaggaaaaaatgaaagagtcgtgtcagtaaaacacaaactcccataaaac |
115 |
Q |
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| T |
11027631 |
atcttgttaacctccaaatctcaggttctgtgccttctcatcagatggaaaaggaaaaaatgaaagagtcgtgtcagtaaaacacaaactcccataaaac |
11027730 |
T |
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| Q |
116 |
tctctcagtagatcaagtctttcatgaagtggagtatattgattagaaatatatagcatcatattttttaattttcacttcgttatattctaaacaaaaa |
215 |
Q |
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| T |
11027731 |
tctctcagtagatcaagtcattcattaagtggaatatattgattagaaatatatcgcatcatatttttcaattttcacttcgttatgttctaaacaaaaa |
11027830 |
T |
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| Q |
216 |
ataataaataatcaagtttataataatttcatttt |
250 |
Q |
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| T |
11027831 |
ataataaataatcaagtttataataatttcatttt |
11027865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 11042566 - 11042627
Alignment:
| Q |
70 |
aaaaaatgaaagagtcgtgtcagtaaaacacaaactcccataaaactctctcagtagatcaa |
131 |
Q |
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| T |
11042566 |
aaaaaatgaaatagtcatgttagtaaaacagaaacacccataaaactctgtcagtagatcaa |
11042627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 10984444 - 10984345
Alignment:
| Q |
150 |
tatattgattagaaatatatagcatcatattttttaattttcacttcgttatattctaaacaaaaaataataaataatcaagtttataataatttcattt |
249 |
Q |
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| T |
10984444 |
tatattgatt-gaaatatatagcatcatatttttcaatttttacttctgtatgttccaaatagacaattttaaataatgaagtttattataacttcattt |
10984346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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