View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_high_8 (Length: 473)
Name: NF19974_high_8
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Complemental strand, 33839004 - 33838557
Alignment:
| Q |
9 |
agcagcacagactgaatagcaaaaatgtacgtagatctaatataatctgagaataagcaacagtgaccagatatgtgaaagtgaggacattacctttggt |
108 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33839004 |
agcaccacacactgaatagcaaaaatgtacgtagatctaatctaatctgagaataagcaacagtgaccagatatgtgaaagtgaggacattacctttggt |
33838905 |
T |
|
| Q |
109 |
gtggtcctataattttggcatcatttttagacaataaggacaaacaaacaaacttttacccttctgattcactaaccagctttgtcatctccattttgca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33838904 |
gtggtcctataattttggcatcatttttagacaataaggacaaacaaacaaacttttacccttctgattcactaaccagctttgtcatctccattttgca |
33838805 |
T |
|
| Q |
209 |
atcaaccacaacatgcatgtggtgattaattatcttataattgaacctttattaattttgaacatcttaatcacgtgccttgccaactttatagctcttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33838804 |
atcaaccacaacatgcatgtggtgattaattatcttataattgaacctttattaattttgaacatcttaatcacgtgccttgccaactttatagctcttg |
33838705 |
T |
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| Q |
309 |
tattttgtctaaacctaaacactaaagtcttgaagcctccaaaacaatggtcggacacaagtttcaaaggttggattgtagtcatgatattctacaagat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33838704 |
tattttgtctaaacctaaacactaaagtcttgaagcctccaaaacaatggtcggacacaagtttcaaaggttggattgtagtcatgatattctacaagat |
33838605 |
T |
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| Q |
409 |
ccaaaaaattatcacatgtaatcatgtgactactagctatggaaatat |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33838604 |
ccaaaaaattatcacatgtaatcatgtgactactagctatggaaatat |
33838557 |
T |
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