View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19974_low_1 (Length: 645)

Name: NF19974_low_1
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19974_low_1
NF19974_low_1
[»] chr4 (1 HSPs)
chr4 (15-634)||(44291265-44291884)
[»] chr1 (17 HSPs)
chr1 (173-358)||(32164424-32164609)
chr1 (173-309)||(27321473-27321609)
chr1 (170-309)||(27262415-27262554)
chr1 (173-309)||(27347422-27347558)
chr1 (175-378)||(32156660-32156863)
chr1 (172-354)||(27360250-27360432)
chr1 (489-603)||(32167637-32167751)
chr1 (458-626)||(27359328-27359496)
chr1 (458-616)||(32156984-32157142)
chr1 (174-317)||(32167096-32167239)
chr1 (23-91)||(32156523-32156591)
chr1 (17-81)||(32166885-32166949)
chr1 (530-603)||(32164801-32164874)
chr1 (29-81)||(27261865-27261917)
chr1 (29-77)||(27320849-27320897)
chr1 (29-81)||(27339786-27339838)
chr1 (20-80)||(32164042-32164102)
[»] chr8 (1 HSPs)
chr8 (389-434)||(17842350-17842395)
[»] chr7 (1 HSPs)
chr7 (389-434)||(44080845-44080890)


Alignment Details
Target: chr4 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 15 - 634
Target Start/End: Complemental strand, 44291884 - 44291265
Alignment:
Q  15 ttcccagcttcttactccaataggatgccatgcctaaatgtgcagtgccacaaacaggatcctgaaaagaaatatgaacctcagcttacttgagtgaaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44291884 ttcccagcttcttactccaataggatgccatgcctaaatgtgcagtgccacaaacaggatcctgaaaagaaatatgaaccttagcttacttgagtgaaaa 44291785  T
Q  115 cattggcaatataatgcaattggaggaacattatgatcataattttcaattcttttaattacctcattgattccaatttttggacagaagaatcggctgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44291784 cattggcaatataatgcaattggaggaacattatgatcataattttcaattattttaattacctcattgattccaatttttggacagaagaatcggctgt 44291685  T
Q  215 agaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacaggtaatttataaattgcatcaaaatgtggttgtacttctgtcac 314  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44291684 agaagtcaaatccagactcaggaggtgcaactcctgaaacacttactccccttacaggtaatttataaattgcatcaaaatgtggttgtacttctgtcac 44291585  T
Q  315 attatttgcggatgcaaccacaacctagaacaaataataagcttcttaatgttggatatgcacaaaaaggactaaaatatatttttaatccctataaaat 414  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44291584 attctttgcggatgcaaccacaacctagaacaaataataagcttcttaatgttggatatgcacaaaaaggactaaaatatatttttaatccctataaaat 44291485  T
Q  415 tgagattttccaagtttagttaataagcagattgattagtacgtaggaattacaatcaagtcatcttgaatctctgtcctcttcacatcaacaatggaag 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44291484 tgagattttccaagtttagttaataagcagattgattagtacgtaggaattacaatcaagtcatcttgaatctctgtcctcttcacatcaacaatggaag 44291385  T
Q  515 cctcactcaatactccagaaataagtgaagtatcatcaaattttagttctgaaattgggtcagcaggaaaatccaattcaacataaaatacatccttagc 614  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44291384 cctcactcaatactccagaaataagtgaaatatcatcaaattttagttctgaaattgggtcagcaggaaaatccaattcaacataaaatacatccttagc 44291285  T
Q  615 ttcatggttttggaaattct 634  Q
    ||||||||||||||||||||    
T  44291284 ttcatggttttggaaattct 44291265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 173 - 358
Target Start/End: Original strand, 32164424 - 32164609
Alignment:
Q  173 ttacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacagg 272  Q
    |||||||||||||||||| ||||||   ||||||||| ||||||||||||||||||||||| ||||| ||||  || | |||| ||| ||||||| ||||    
T  32164424 ttacctcattgattccaaattttggggcgaagaatcgactgtagaagtcaaatccagactctggaggagcaatcccggtaacaattaatccccttccagg 32164523  T
Q  273 taatttataaattgcatcaaaatgtggttgtacttctgtcacattatttgcggatgcaaccacaacctagaacaaataataagctt 358  Q
    |||||||  ||||||||| |  ||||| |||| |||||| ||||| ||| | ||||| |||||||||||||| |||||||||||||    
T  32164524 taatttagcaattgcatccagttgtggctgtatttctgtgacattttttccagatgcgaccacaacctagaagaaataataagctt 32164609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 173 - 309
Target Start/End: Original strand, 27321473 - 27321609
Alignment:
Q  173 ttacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacagg 272  Q
    |||||||||||||||||| ||||||  |||||||||| ||||||||||||||||| ||||||||||||||||  |||| |||||||||||||||| |||     
T  27321473 ttacctcattgattccaaattttggggagaagaatcgactgtagaagtcaaatccggactcaggaggcgcaatccctgtaacacttactccccttccaga 27321572  T
Q  273 taatttataaattgcatcaaaatgtggttgtacttct 309  Q
    |||||||   | ||||||||| |||||||||||||||    
T  27321573 taatttagctagtgcatcaaattgtggttgtacttct 27321609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 170 - 309
Target Start/End: Original strand, 27262415 - 27262554
Alignment:
Q  170 taattacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttac 269  Q
    ||||||||||||||||||||| ||||||  |||||||||| ||||||||||||||||| || ||||||||| |||  |||| |||||||||||||||| |    
T  27262415 taattacctcattgattccaaattttggggagaagaatcgactgtagaagtcaaatcccgaatcaggaggcacaatccctgtaacacttactccccttcc 27262514  T
Q  270 aggtaatttataaattgcatcaaaatgtggttgtacttct 309  Q
    || |||||||   | |||||||||||||||||||||||||    
T  27262515 agataatttagctagtgcatcaaaatgtggttgtacttct 27262554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 173 - 309
Target Start/End: Original strand, 27347422 - 27347558
Alignment:
Q  173 ttacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacagg 272  Q
    ||||||| ||||||||||  |||||  |||||||||| ||||||||||||||||| ||||||||||| ||||  |||| |||||||||||||||| |||     
T  27347422 ttacctcgttgattccaaactttggggagaagaatcgactgtagaagtcaaatcctgactcaggaggtgcaatccctgtaacacttactccccttccaga 27347521  T
Q  273 taatttataaattgcatcaaaatgtggttgtacttct 309  Q
    |||||||   | ||||||||| |||| ||||||||||    
T  27347522 taatttagctagtgcatcaaattgtgcttgtacttct 27347558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 175 - 378
Target Start/End: Original strand, 32156660 - 32156863
Alignment:
Q  175 acctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacaggta 274  Q
    |||||||| | ||||| |||||| ||||| ||||| |||||||| |||||||| ||||| ||||| || |  |||| |||| |||  |||||| ||||      
T  32156660 acctcatttactccaaattttgggcagaaaaatcgactgtagaaatcaaatcccgactctggaggagcgatccctgtaacaattatcccccttccaggag 32156759  T
Q  275 atttataaattgcatcaaaatgtggttgtacttctgtcacattatttgcggatgcaaccacaacctagaacaaataataagcttcttaatgttggatatg 374  Q
    ||||   |||||||||||| |||||||| |||||| | ||||| ||| | ||||  || ||||||||| | |||||||||||||| |||||||  |||||    
T  32156760 attttacaattgcatcaaattgtggttgcacttctatgacattctttccagatgtgacaacaacctaggagaaataataagcttcataatgttctatatg 32156859  T
Q  375 caca 378  Q
    ||||    
T  32156860 caca 32156863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 172 - 354
Target Start/End: Complemental strand, 27360432 - 27360250
Alignment:
Q  172 attacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacag 271  Q
    ||||||||||||| ||||||||||||    |||||||| |||||||| |||||||| ||||||| ||||||||  ||||| |||||||||||||||   |    
T  27360432 attacctcattgactccaatttttggggcaaagaatcgactgtagaaatcaaatcctgactcagaaggcgcaatccctgatacacttactccccttctgg 27360333  T
Q  272 gtaatttataaattgcatcaaaatgtggttgtacttctgtcacattatttgcggatgcaaccacaacctagaacaaataataa 354  Q
    ||| | |  ||||||||||||| ||||| |||| | || | ||||| ||| | ||||  |||||||||||  | |||||||||    
T  27360332 gtattctgcaaattgcatcaaattgtggatgtattgctttgacattctttccagatgtgaccacaacctaagagaaataataa 27360250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 603
Target Start/End: Original strand, 32167637 - 32167751
Alignment:
Q  489 tgtcctcttcacatcaacaatggaagcctcactcaatactccagaaataagtgaagtatcatcaaattttagttctgaaattgggtcagcaggaaaatcc 588  Q
    ||||||||| | ||||| |||||||||  || ||||| |||||||||| |||||||| |||| | | || | ||||| ||| ||||||||||||||||||    
T  32167637 tgtcctctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcattagaattgaattctgcaatagggtcagcaggaaaatcc 32167736  T
Q  589 aattcaacataaaat 603  Q
    ||||||| |||||||    
T  32167737 aattcaatataaaat 32167751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 458 - 626
Target Start/End: Complemental strand, 27359496 - 27359328
Alignment:
Q  458 taggaattacaatcaagtcatcttgaatctctgtcctcttcacatcaacaatggaagcctcactcaatactccagaaataagtgaagtatcatcaaattt 557  Q
    ||||||||||||  | || ||||||||||  ||||||||| | |||||  || |||||  ||| |||| || ||||||| ||||||||||||||||| ||    
T  27359496 taggaattacaagtatgttatcttgaatcagtgtcctctttatatcaattatagaagcaccacccaatgcttcagaaatgagtgaagtatcatcaaaatt 27359397  T
Q  558 tagttctgaaattgggtcagcaggaaaatccaattcaacataaaatacatccttagcttcatggttttg 626  Q
     ||||| | ||| |||||  | |||||||||||||| | ||| |||  |||||| ||||||| ||||||    
T  27359396 gagttcagtaatagggtccactggaaaatccaattctatatagaatgtatcctttgcttcatcgttttg 27359328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 616
Target Start/End: Original strand, 32156984 - 32157142
Alignment:
Q  458 taggaattacaatcaagtcatcttgaatctctgtcctcttcacatcaacaatggaagcctcactcaatactccagaaataagtgaagtatcatcaaattt 557  Q
    ||||||||||||  |||||||||||||| | ||||||||| | |||||  ||||||||  ||  |||| ||  |||||| ||  |||| || || |||||    
T  32156984 taggaattacaagtaagtcatcttgaatttgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgagccaagtgtcgtcgaattt 32157083  T
Q  558 tagttctgaaattgggtcagcaggaaaatccaattcaacataaaatacatccttagctt 616  Q
     |  ||||  || ||||||||||||||||||||||||| |||| |||||||||| ||||    
T  32157084 gaactctgtgatagggtcagcaggaaaatccaattcaatataagatacatccttggctt 32157142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 317
Target Start/End: Original strand, 32167096 - 32167239
Alignment:
Q  174 tacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacaggt 273  Q
    ||||||||||||||||  ||| || |||||  |||| ||||||||||||||||| ||||| ||||| || |  |||| |||| ||| ||||| | | ||     
T  32167096 tacctcattgattccatgtttcgggcagaaatatcgactgtagaagtcaaatccggactctggaggagcgatccctgtaacaatta-tccccatcccggg 32167194  T
Q  274 a-atttataaattgcatcaaaatgtggttgtacttctgtcacatt 317  Q
    | |||||  |||||||||||| ||||||||||||||||| |||||    
T  32167195 acatttaacaattgcatcaaattgtggttgtacttctgtgacatt 32167239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 32156523 - 32156591
Alignment:
Q  23 ttcttactccaataggatgccatgcctaaatgtgcagtgccacaaacaggatcctgaaaagaaatatga 91  Q
    ||||| ||||||||||||||||  ||  |||||||| | |||||||| |||||||||||||||| ||||    
T  32156523 ttcttgctccaataggatgccaatccacaatgtgcactcccacaaactggatcctgaaaagaaaaatga 32156591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 32166885 - 32166949
Alignment:
Q  17 cccagcttcttactccaataggatgccatgcctaaatgtgcagtgccacaaacaggatcctgaaa 81  Q
    |||| |||||| |||||||||| ||||| |||  |||||||| | ||||||||||||||||||||    
T  32166885 cccaacttcttgctccaatagggtgccaagccacaatgtgcactcccacaaacaggatcctgaaa 32166949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 603
Target Start/End: Original strand, 32164801 - 32164874
Alignment:
Q  530 cagaaataagtgaagtatcatcaaattttagttctgaaattgggtcagcaggaaaatccaattcaacataaaat 603  Q
    ||||||| ||||||||||||||| | || | ||||| ||  |||| |||||||||||||| ||||| |||||||    
T  32164801 cagaaatgagtgaagtatcatcagaattgaattctgcaacagggtaagcaggaaaatccatttcaatataaaat 32164874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 27261865 - 27261917
Alignment:
Q  29 ctccaataggatgccatgcctaaatgtgcagtgccacaaacaggatcctgaaa 81  Q
    |||||||||| ||||| |||  |||||||| | ||||||||||||||||||||    
T  27261865 ctccaatagggtgccaagccacaatgtgcactcccacaaacaggatcctgaaa 27261917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 27320849 - 27320897
Alignment:
Q  29 ctccaataggatgccatgcctaaatgtgcagtgccacaaacaggatcct 77  Q
    |||||||||| ||||| |||  |||||||||| ||||||||||||||||    
T  27320849 ctccaatagggtgccaagccacaatgtgcagtcccacaaacaggatcct 27320897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 27339786 - 27339838
Alignment:
Q  29 ctccaataggatgccatgcctaaatgtgcagtgccacaaacaggatcctgaaa 81  Q
    |||||||||| |||||  ||  |||||||||| ||||||||||||||||||||    
T  27339786 ctccaatagggtgccaaaccacaatgtgcagtcccacaaacaggatcctgaaa 27339838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 32164042 - 32164102
Alignment:
Q  20 agcttcttactccaataggatgccatgcctaaatgtgcagtgccacaaacaggatcctgaa 80  Q
    |||||||| |||||||||||||||| |||  | || ||| | |||||||||||||||||||    
T  32164042 agcttcttgctccaataggatgccaagccacagtgggcactcccacaaacaggatcctgaa 32164102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 17842350 - 17842395
Alignment:
Q  389 aaatatatttttaatccctataaaattgagattttccaagtttagt 434  Q
    ||||||||||||| |||||||||||||||||  ||| |||||||||    
T  17842350 aaatatatttttagtccctataaaattgagaccttcaaagtttagt 17842395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 44080845 - 44080890
Alignment:
Q  389 aaatatatttttaatccctataaaattgagattttccaagtttagt 434  Q
    |||||| ||||||||||||||||||||||||  ||| |||||||||    
T  44080845 aaatatgtttttaatccctataaaattgagaccttctaagtttagt 44080890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University