View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19974_low_10 (Length: 406)

Name: NF19974_low_10
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19974_low_10
NF19974_low_10
[»] chr8 (4 HSPs)
chr8 (1-390)||(38341723-38342093)
chr8 (335-391)||(38333969-38334025)
chr8 (124-153)||(16515088-16515117)
chr8 (180-248)||(45000131-45000198)
[»] chr3 (5 HSPs)
chr3 (180-283)||(37549926-37550029)
chr3 (45-96)||(31148873-31148924)
chr3 (214-257)||(20642070-20642114)
chr3 (36-89)||(44442264-44442321)
chr3 (180-224)||(48507450-48507494)
[»] chr2 (7 HSPs)
chr2 (180-283)||(37422857-37422960)
chr2 (106-187)||(21449705-21449781)
chr2 (76-153)||(41873714-41873792)
chr2 (189-237)||(13728636-13728685)
chr2 (104-141)||(37423155-37423192)
chr2 (186-282)||(41873557-41873654)
chr2 (180-254)||(34957894-34957970)
[»] chr4 (8 HSPs)
chr4 (180-284)||(16502583-16502688)
chr4 (180-283)||(53504679-53504782)
chr4 (190-237)||(38870592-38870639)
chr4 (180-254)||(40020673-40020752)
chr4 (180-276)||(3479153-3479248)
chr4 (121-153)||(38870697-38870729)
chr4 (36-94)||(16502241-16502299)
chr4 (121-151)||(49445045-49445075)
[»] chr1 (6 HSPs)
chr1 (181-276)||(19607208-19607304)
chr1 (175-251)||(11046900-11046978)
chr1 (182-284)||(13818793-13818895)
chr1 (101-153)||(40077026-40077078)
chr1 (118-153)||(50845719-50845754)
chr1 (36-89)||(46395985-46396042)
[»] scaffold0493 (1 HSPs)
scaffold0493 (170-237)||(4167-4234)
[»] chr6 (3 HSPs)
chr6 (36-95)||(779494-779553)
chr6 (76-150)||(10525381-10525454)
chr6 (180-248)||(10525257-10525324)
[»] chr7 (3 HSPs)
chr7 (180-226)||(45249228-45249274)
chr7 (101-148)||(8530377-8530423)
chr7 (180-267)||(44208508-44208595)
[»] chr5 (10 HSPs)
chr5 (180-282)||(29465695-29465797)
chr5 (187-283)||(15047156-15047253)
chr5 (179-224)||(29075674-29075719)
chr5 (28-73)||(37910342-37910387)
chr5 (58-97)||(19176059-19176098)
chr5 (32-90)||(22771161-22771219)
chr5 (180-250)||(31673991-31674063)
chr5 (214-257)||(21524218-21524262)
chr5 (214-257)||(21534778-21534822)
chr5 (101-153)||(37910257-37910309)


Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 38342093 - 38341723
Alignment:
Q  1 ctctgatttgtgtttctgattgtgtagttgatttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagtcagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342093 ctctgatttgtgtttctgattgtgtagttgatttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagtcagtc 38341994  T
Q  101 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaaaggggaaaccctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||                  |||||||||||||||||||    
T  38341993 agttagttattcggattggttagagagtatgtgtataaataggagaacacaaa-ggttagata------------------ttgtaaaggggaaaccctt 38341913  T
Q  201 ggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaatacatcattttatttgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341912 ggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaatacatcattttatttgc 38341813  T
Q  301 aatctttctcagaatgctaacgggagnnnnnnncctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaa 390  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341812 aatctttctcagaatgctaacgggagaaaaaaacctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaa 38341723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 38334025 - 38333969
Alignment:
Q  335 ctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaat 391  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||    
T  38334025 ctctaaagaagcataaaatatcttctattgctggtgtggaggataaaggtggtaaat 38333969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 16515088 - 16515117
Alignment:
Q  124 agagtatgtgtataaataagagaacacaaa 153  Q
    ||||||||||||||||||||||||||||||    
T  16515088 agagtatgtgtataaataagagaacacaaa 16515117  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 45000198 - 45000131
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 248  Q
    |||||| ||||||||||||||| |||||| ||| |||||  |||| |||||||||||| ||||| ||||    
T  45000198 tattgtgaaggggaaacccttg-aggagatattctctcctgttctatcctatttcttaataaaattgtt 45000131  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 37549926 - 37550029
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 279  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||| || |||||||||   ||||||||||||||||||||||| ||| |||||||| ||    
T  37549926 tattgtgaaggggaaactcttggaggagagattatctcctattctatcatatttcttaaataaagtgttctttctattccattccattcttgggttccta 37550025  T
Q  280 acaa 283  Q
    ||||    
T  37550026 acaa 37550029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 31148924 - 31148873
Alignment:
Q  45 atagaataatggctaattagagtagttaatctagttaagagttgttatagtc 96  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||| ||||    
T  31148924 atagaatagtggttaattagagtagttaaagtagttaagagttgttacagtc 31148873  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 20642114 - 20642070
Alignment:
Q  214 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 257  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||    
T  20642114 tctcccattctttcctattttcttaataaaagttttctttctatt 20642070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 44442321 - 44442264
Alignment:
Q  36 tgttgggatatagaataatggctaatta----gagtagttaatctagttaagagttgt 89  Q
    |||| |||||||||||||||||||||||    || |||||||| ||||||||||||||    
T  44442321 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 44442264  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 48507450 - 48507494
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagattatctcccattct 224  Q
    |||||| || ||||||||||||||||||||||| ||||| |||||    
T  48507450 tattgtgaaagggaaacccttggaggagagattctctcctattct 48507494  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 37422960 - 37422857
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 279  Q
    |||||| |||| ||||||||||||||||||||| ||||| ||||| |||||||||||  |||||||||||||||| |   |||||||| |||||||| ||    
T  37422960 tattgtgaaggtgaaacccttggaggagagattctctcctattctatcctatttcttcataaaagtgttctttctttggaattcaatttttgggttccta 37422861  T
Q  280 acaa 283  Q
    ||||    
T  37422860 acaa 37422857  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 21449781 - 21449705
Alignment:
Q  106 gttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaa 187  Q
    |||||| |||||  |||||||||||||||||||||| ||||||| |||| ||    ||||||||||||||||||||||||||    
T  21449781 gttatttggattacttagagagtatgtgtataaataggagaaca-aaaatgt----taaagagtatcttttgaatattgtaa 21449705  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 41873792 - 41873714
Alignment:
Q  76 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaa-taagagaacacaaa 153  Q
    ||||||||||||| |||||| ||| |   ||||||| ||||| ||||||||||||||||||||| || |||||||||||    
T  41873792 tagttaagagttgctatagttagttacaaagttatttggattagttagagagtatgtgtataaattaggagaacacaaa 41873714  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 13728636 - 13728685
Alignment:
Q  189 ggggaaacccttggaggagaga-ttatctcccattctttcctatttctta 237  Q
    |||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  13728636 ggggaaacccttggaggagatatttctctcctattctttcctatttctta 13728685  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 37423192 - 37423155
Alignment:
Q  104 tagttattcggattggttagagagtatgtgtataaata 141  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  37423192 tagttatttggattagttagagagtatgtgtataaata 37423155  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 41873654 - 41873557
Alignment:
Q  186 aaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttcttaaca 282  Q
    ||||||||||| |||||||||||||||||||||   |||||| || ||||||| |  |   |||||||||||||||||||  | |||||||| |||||    
T  41873654 aaaggggaaactcttggaggagagattatctcctggtctttcttattttcttaatttagtggttctttctattccattcagctcttgggttcctaaca 41873557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 34957970 - 34957894
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttc-ttagtaaaagtgttctttct 254  Q
    |||||| |||| | ||||||||||||||||| || ||||| ||| ||||||||||| ||| ||||||||||| ||||    
T  34957970 tattgtgaaggtgtaacccttggaggagagatttctctcctattatttcctatttctttattaaaagtgttcgttct 34957894  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 16502583 - 16502688
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctt 278  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||| || ||||||||| || ||||||||||||||    || ||||| |||||||| |    
T  16502583 tattgtgaaggggaaacccttggaggagagatttctctcctattctatcatatttcttaatataagtgttctttctaaagaatccaattcttgggttcct 16502682  T
Q  279 aacaat 284  Q
    ||||||    
T  16502683 aacaat 16502688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 53504679 - 53504782
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 279  Q
    |||||| ||||||||||||||||||||| |||| || ||  |||| || |||||||||    ||||||| |||||||||||||||||| || ||||| ||    
T  53504679 tattgtgaaggggaaacccttggaggagtgattctcccctgttctatcatatttcttaaattaagtgttttttctattccattcaattatttggttccta 53504778  T
Q  280 acaa 283  Q
    ||||    
T  53504779 acaa 53504782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 38870639 - 38870592
Alignment:
Q  190 gggaaacccttggaggagagattatctcccattctttcctatttctta 237  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  38870639 gggaaacccttgcaggagagattatctcccactctatcctatttctta 38870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 40020752 - 40020673
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagatt-atctccc-attctttcctattt---cttagtaaaagtgttctttct 254  Q
    |||||| |||||||| |||||| |||||||||| ||||||| ||||||||||||||   |||| ||||||||||||||||    
T  40020752 tattgtgaaggggaatcccttgaaggagagatttatctccctattctttcctattttttcttaataaaagtgttctttct 40020673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 3479248 - 3479153
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttc 276  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||  || |||||||||   |||||||||||||| ||  |||||||| ||||||||    
T  3479248 tattgtcaaggggaaacccttg-aggagagattctctcttattccatcatatttcttaaataaagtgttctttcttttgaattcaattcttgggttc 3479153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 38870729 - 38870697
Alignment:
Q  121 tagagagtatgtgtataaataagagaacacaaa 153  Q
    |||||||||||||||||||||||||||||||||    
T  38870729 tagagagtatgtgtataaataagagaacacaaa 38870697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 16502241 - 16502299
Alignment:
Q  36 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatag 94  Q
    |||| |||||||  |||||||| |||||| ||||||||  |||||||||||||||||||    
T  16502241 tgttaggatatattataatggccaattagtgtagttaaagtagttaagagttgttatag 16502299  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 49445075 - 49445045
Alignment:
Q  121 tagagagtatgtgtataaataagagaacaca 151  Q
    |||||||||||||||||||||||||||||||    
T  49445075 tagagagtatgtgtataaataagagaacaca 49445045  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 19607304 - 19607208
Alignment:
Q  181 attgtaaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttc 276  Q
    ||||| |||||||||||||||||||||||||| ||||| | |||||| || ||||||| | ||| |||||||| |||||||| |||||  |||||||    
T  19607304 attgtgaaggggaaacccttggaggagagattctctcctactctttcttattttcttaattaaattgttctttatattccatccaattactgggttc 19607208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 11046900 - 11046978
Alignment:
Q  175 ttgaatattgtaaaggggaaacccttggaggagaga-ttatctcccattctttccta-tttcttagtaaaagtgttctt 251  Q
    ||||| ||||| |||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |||||| ||||||    
T  11046900 ttgaacattgtgaaggggaaacccttggagtagagatttatctcctattctttcctattttcttaataaaagagttctt 11046978  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 13818895 - 13818793
Alignment:
Q  182 ttgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaac 281  Q
    |||| ||||||||||||||| |||||||||| ||||||||| | || ||||||||  | ||||| |||||||| |   |||||||| ||||| || ||||    
T  13818895 ttgtgaaggggaaacccttgaaggagagattctctcccattttatcatatttcttcatgaaagttttctttctttcgaattcaattcttgggctcctaac 13818796  T
Q  282 aat 284  Q
    |||    
T  13818795 aat 13818793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 40077026 - 40077078
Alignment:
Q  101 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 153  Q
    |||| |||||| ||||| ||||||||||||||| ||||||| |||||||||||    
T  40077026 agtttgttatttggattagttagagagtatgtgcataaataggagaacacaaa 40077078  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 50845754 - 50845719
Alignment:
Q  118 ggttagagagtatgtgtataaataagagaacacaaa 153  Q
    ||||||||||||||||||||||||||| ||||||||    
T  50845754 ggttagagagtatgtgtataaataagaaaacacaaa 50845719  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 46395985 - 46396042
Alignment:
Q  36 tgttgggatatagaataatggc----taattagagtagttaatctagttaagagttgt 89  Q
    |||| |||||||||||||||||    |||||||| |||||||| ||||||||||||||    
T  46395985 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 46396042  T

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Target: scaffold0493 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 4234 - 4167
Alignment:
Q  170 atcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttctta 237  Q
    |||||||||||||||| || |||||||||||| |||||||||| || || ||||| || |||||||||    
T  4234 atcttttgaatattgtgaatgggaaacccttgaaggagagattctcccctattctatcatatttctta 4167  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 779494 - 779553
Alignment:
Q  36 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagt 95  Q
    |||| |||||| ||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  779494 tgttaggatatggaataatggctaaatagagtagttaatgtagttaagagctgctatagt 779553  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 10525454 - 10525381
Alignment:
Q  76 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataagagaacac 150  Q
    |||||| ||||||||| ||  ||| |||| ||| || ||||| |||||||||| |||||||||||||||||||||    
T  10525454 tagttatgagttgttagaga-agttagtttgttttttggattagttagagagtgtgtgtataaataagagaacac 10525381  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 10525324 - 10525257
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 248  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||| ||| |||||||| ||||| ||||    
T  10525324 tattgtgaaggggaaacccttg-aggagagattttctcgtattctatccaatttcttaataaaattgtt 10525257  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 45249274 - 45249228
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagattatctcccattcttt 226  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||    
T  45249274 tattgtgaaggggaaacccttggaggatagattttctcccattcttt 45249228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 8530423 - 8530377
Alignment:
Q  101 agttagttattcggattggttagagagtatgtgtataaataagagaac 148  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  8530423 agttagttatttggattagttagagag-atgtgtataaataagagaac 8530377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 44208595 - 44208508
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaatt 267  Q
    |||||| |||||||||| ||||||||| ||||| ||||  ||||| || | |||||||   ||||| ||||||||||| |||||||||    
T  44208595 tattgtgaaggggaaactcttggaggaaagattctctcttattctatcgtgtttcttaaataaagtattctttctatttcattcaatt 44208508  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 29465695 - 29465797
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 279  Q
    |||||| ||||||||||  |||||||||||||| |||     ||| || |||||||||   ||||||||||||||||||||||||||| |||| ||| ||    
T  29465695 tattgtgaaggggaaacggttggaggagagattctcttttcgtctatcatatttcttaaataaagtgttctttctattccattcaattcttggattccta 29465794  T
Q  280 aca 282  Q
    |||    
T  29465795 aca 29465797  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 15047156 - 15047253
Alignment:
Q  187 aaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaa 283  Q
    |||||||||||||||||||||||| || ||||| ||||||| ||| || | | |||||||||||||||| |   || ||||| |||||||| ||||||    
T  15047156 aaggggaaacccttggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcctaacaa 15047253  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 29075674 - 29075719
Alignment:
Q  179 atattgtaaaggggaaacccttggaggagagattatctcccattct 224  Q
    ||||||| ||||||||| |||||||||||||||||||||| |||||    
T  29075674 atattgtgaaggggaaaaccttggaggagagattatctccaattct 29075719  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 37910387 - 37910342
Alignment:
Q  28 ttgatttgtgttgggatatagaataatggctaattagagtagttaa 73  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  37910387 ttgagttgtgttgggatgtagaataatgactaattagagtagttaa 37910342  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 19176059 - 19176098
Alignment:
Q  58 taattagagtagttaatctagttaagagttgttatagtca 97  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  19176059 taattagagtagttaaagtagttaagagttgttatagtca 19176098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 22771161 - 22771219
Alignment:
Q  32 tttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgtt 90  Q
    |||||||| ||||||| |||||||||||| ||||||||||||  ||| || ||||||||    
T  22771161 tttgtgttaggatataaaataatggctaactagagtagttaaattagctatgagttgtt 22771219  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 31673991 - 31674063
Alignment:
Q  180 tattgtaaaggggaaacccttggaggagagattatctcccat--tctttcctatttcttagtaaaagtgttct 250  Q
    |||||| |||||||| ||||||||||||||||| ||||| ||  | | |||||||| ||| ||||||||||||    
T  31673991 tattgtgaaggggaaccccttggaggagagattctctcctattatatatcctattttttaataaaagtgttct 31674063  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 21524218 - 21524262
Alignment:
Q  214 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 257  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  21524218 tctcccattctttcctattttcttaataaatgtgttctttctatt 21524262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 21534778 - 21534822
Alignment:
Q  214 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 257  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  21534778 tctcccattctttcctattttcttaataaatgtgttctttctatt 21534822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 37910309 - 37910257
Alignment:
Q  101 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 153  Q
    ||||||||||| ||||| |||| |||||||||| ||||||| ||||| |||||    
T  37910309 agttagttatttggattagttaaagagtatgtgcataaataggagaatacaaa 37910257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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