View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_low_13 (Length: 383)
Name: NF19974_low_13
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 367
Target Start/End: Original strand, 27160180 - 27160535
Alignment:
| Q |
13 |
tgagaagaaatgaaattcaagaacattttctttatgtttacttaataaataaaaaattatgtatgatagttattttaaagtctgcaatttagaataatgt |
112 |
Q |
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| T |
27160180 |
tgagaagaaatgaaattcaagaacattttctttatgttttcttaataaataaaaa-ttatgtatgatagttattttaatgtctgcaatttagaataatgt |
27160278 |
T |
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| Q |
113 |
ttgataatcattataaaacactataaattgta--ataaatcaacggtttaatatttgtgtgtttgtacatgaatatgtacctcagacacaccaaatacaa |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27160279 |
ttgataatcattataaaacactataaattgtataataaatcaacggtttaatatttgtgtgtttgtacatgaatatgtacctcagacacaccaaatacaa |
27160378 |
T |
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| Q |
211 |
acacactttttattgtcaaattccataactatttattttactttattgtaggtgaatatgaatttttcattgacaaggtttttaggtggtaggagtgtat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27160379 |
acacactttttattgtcaaattccataactatttattttactttattgtaggtgaatatgaatttttcattgacaaggtttttaggtggtgggagtgtat |
27160478 |
T |
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| Q |
311 |
atatttttaatgtttggactaatgacacctctcctaacaagatttatgccacacttt |
367 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27160479 |
atatttttaatgttttgactaatgacacctctcctaacaagatttatgccacacttt |
27160535 |
T |
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