View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_low_18 (Length: 354)
Name: NF19974_low_18
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 9712492 - 9712162
Alignment:
| Q |
8 |
aacagaatatataaagaaagaggaagagacagaagtgggcacacacaagattcaccgtattgcatgggattctgtaagatattctgacaaataagacggt |
107 |
Q |
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| T |
9712492 |
aacagaatatataaagaaagaggaagagacagaagtggacacacacaagattcaccgtattgcatgggattctgtaagatattctgacaaataagacggt |
9712393 |
T |
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| Q |
108 |
cggttaggtgttcgataccatttcttatttttctacgtcattcacactcttgatatcctactacaatgttacatatcaaactaacccactaatgagcaac |
207 |
Q |
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| T |
9712392 |
cggttaggtgttcgataccatttcttatttttctacgtcattcacactcttgatatcctactacaatgttacatatcaaactaacccactaatgagcaac |
9712293 |
T |
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| Q |
208 |
gcaagcaaaaccaaattgaagtaaatcaattgaaaaatctatgtttttacttgtgttctttatgagttagattgaggcagatggtaaattttaagttggt |
307 |
Q |
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| T |
9712292 |
gcaagcaaaaccaaattgaagt-aatcaattgaaaaatctatg-ttttacttgtgttctttatgagttagattgaggcagatggtaaattttaagttggt |
9712195 |
T |
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| Q |
308 |
ttcctaataaacccaaattatttatagctatat |
340 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
9712194 |
ttcctaataaacccaaattatttatagctatat |
9712162 |
T |
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