View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_low_2 (Length: 580)
Name: NF19974_low_2
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 37498178 - 37497871
Alignment:
| Q |
11 |
cataggcttgggggaattgaagcaagagttgaatgatactggagacaacaacaaaagggtaggagtaagcaagtattctttgttggtaggaaaattgtca |
110 |
Q |
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| T |
37498178 |
cataggcttgggggaattgaagcaagagttgaatgatactggagacaacaacaaaagggtaggagtaagcaagtattctttgttggtaggaaaattgtca |
37498079 |
T |
|
| Q |
111 |
ttattattctttcattctttactgcggataagatttactacttcaaagagatttgtattaatacaccaatattactttctgttcttaattttatagtcaa |
210 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37498078 |
ttattattctttcattctttaatgcggataagatttactacttcaaagagatttgtattaatacaccaatattactttctgttcttaattttatagtcaa |
37497979 |
T |
|
| Q |
211 |
gatttctagatatacatttagagataaattttgcttgattatttcgttctttatgtattcattttcaagttcttgtactatttatagttgaaggtgaaat |
310 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
37497978 |
gatttctagatatacatttgaagataaattttgcttgattatttcattctttttgtattcattttcaagtttttgtactatttatatttgaaggtgaaat |
37497879 |
T |
|
| Q |
311 |
gaaattct |
318 |
Q |
| |
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|||||||| |
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| T |
37497878 |
gaaattct |
37497871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 270 - 560
Target Start/End: Complemental strand, 37497855 - 37497567
Alignment:
| Q |
270 |
cattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcattattcatgttagtttcagtttgtgctatttcaatcaatta |
369 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37497855 |
cattctcaagtccttgtactatttatagttgaaggtgaaatgaaattctctactattcattactcatgttagtttcagtttgtgctatttcaatcaatta |
37497756 |
T |
|
| Q |
370 |
agcatccaagcaaaaataattagtgcctctagagaatatttcacctcgaaactgatatcaaatcgagacaagtggaagacataggcggatgctatatcta |
469 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37497755 |
agcatccaagcaaaaataattagtgcctctaga--atatttcacctcgaaactaatatcaaatcgagacaagtggaagacataggcggatgctatatcta |
37497658 |
T |
|
| Q |
470 |
tggtttgttatttcataccacttcgtgcaaaagaagcatgcttttgtaaaaagatcatggaaattttacggttttatgatctatctgtgaa |
560 |
Q |
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| T |
37497657 |
tggtttgttatttcataccacttcgtgcaaaagaaccatactttttacaaaagatcatggaaattttacggctttatgatctatcggtgaa |
37497567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 494 - 565
Target Start/End: Original strand, 37498505 - 37498574
Alignment:
| Q |
494 |
gtgcaaaagaagcatgcttttgtaaaaagatcatggaaattttacggttttatgatctatctgtgaattttt |
565 |
Q |
| |
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|||||||||||||||| |||||| |||| |||||| |||||||| |||||||||||||| ||||||||||| |
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| T |
37498505 |
gtgcaaaagaagcatgtttttgtgaaaa--tcatgggaattttacagttttatgatctatttgtgaattttt |
37498574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 5e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 267 - 565
Target Start/End: Complemental strand, 31321673 - 31321382
Alignment:
| Q |
267 |
attcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcattattcatgttagtttcagtttgtgctatttcaatcaa |
366 |
Q |
| |
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||||||| |||||| |||||||||| | |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || || ||| |
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| T |
31321673 |
attcattctcaagtccttgtactatctgtagttgaaggtgaaatgacattctctactattcattatttatgttagtttcagtttgtactgtt----tcag |
31321578 |
T |
|
| Q |
367 |
ttaagcatccaagcaaaaataattagtgcctctagagaatatttcacctcgaaactgatatcaaatcgagacaagtggaagacataggcggatgctatat |
466 |
Q |
| |
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|||| |||||||||||||||||||||||| |||| |||| |||||||||||||| ||||||||||||||||||| ||| |||| ||| | ||| ||| | |
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| T |
31321577 |
ttaaacatccaagcaaaaataattagtgcatctatagaacatttcacctcgaaattgatatcaaatcgagacaaatggtggacacaggtgaatgttatct |
31321478 |
T |
|
| Q |
467 |
ctatggtttgttatttcataccacttcgtgcaaaagaagcatgcttttgtaaaaagatcatggaaattttacggttttatgatctatctgtgaattttt |
565 |
Q |
| |
|
||||||||| |||||| |||| |||| ||||||||||| ||||||||||| ||| |||| | |||||||| ||||||||||||||||||||| |||| |
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| T |
31321477 |
ctatggttt-ttattttatactacttagtgcaaaagaaccatgcttttgtgaaa--atcacgaaaattttatagttttatgatctatctgtgaaatttt |
31321382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 163 - 330
Target Start/End: Complemental strand, 31321833 - 31321667
Alignment:
| Q |
163 |
ttgtattaatacaccaatattactttc-tgttcttaattttatagtcaagatttctagatatacatttagagataaattttgcttgattatttcgttctt |
261 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | |||||||||| || | || ||||| |||||| | ||||| |
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| T |
31321833 |
ttgtattaatacatcaatattacttttatgttcttaattttatagtcaagatttc-atatatacatttgaagtccatttctgcttcattatt-cattctt |
31321736 |
T |
|
| Q |
262 |
tatgtattcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcatt |
330 |
Q |
| |
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||| |||| ||||||||||| ||||||||||| || ||||||||||||||||||||| ||| ||||||| |
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| T |
31321735 |
tatatatttattttcaagttattgtactatttgtatttgaaggtgaaatgaaattctttacaattcatt |
31321667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 63 - 330
Target Start/End: Complemental strand, 42601979 - 42601699
Alignment:
| Q |
63 |
aaaagggtaggagtaagcaagt--attctttgttggtaggaaaattgtcattattattctttcattctttactgcggataagatttactacttcaaagag |
160 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| | |
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| T |
42601979 |
aaaagggtaggagtcagcaagggaattctttgttggtagaaaaattgtcattattattctttcattctttattgcagataagatttactagttcaaaggg |
42601880 |
T |
|
| Q |
161 |
---------------atttgtattaatacaccaatattactttctgttcttaattttat-----agtcaagatttctagatatacatttagagataaatt |
240 |
Q |
| |
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||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||||||| || ||||| |
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| T |
42601879 |
tagttagtgcaatttatttgtattaatacatcaatat---tttctgttcttaattttatagtcaagtcaagatttccagatatacatttgaagtcaaatt |
42601783 |
T |
|
| Q |
241 |
ttgcttgattatttcgttctttatgtattcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcatt |
330 |
Q |
| |
|
||||| | |||||| || |||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||| ||||||| |
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| T |
42601782 |
ctgcttcactatttcattttttatgtattcattatcaagtcgttgtactat------ttgaaggtgaaatgaaattcattacaattcatt |
42601699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 564
Target Start/End: Complemental strand, 28686856 - 28686815
Alignment:
| Q |
523 |
atcatggaaattttacggttttatgatctatctgtgaatttt |
564 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
28686856 |
atcatggaaattttacagttttatgatccatctgcgaatttt |
28686815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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