View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19974_low_21 (Length: 333)
Name: NF19974_low_21
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_low_21 |
 | |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0703 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 22 - 333
Target Start/End: Original strand, 54423537 - 54423848
Alignment:
| Q |
22 |
agggccaatgcggtcgccgttaaaaatgacgtgatattcaacggaggtgatgcgcatcatcatccaggaagtccactgtgaactgaaccccattttaaat |
121 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54423537 |
agggccaatgcggtcgccgttgaaaatgacgtgatattcaacggaggtgatgcacatcatcatccaggaagtccactgtgaactgaaccccattttaaat |
54423636 |
T |
|
| Q |
122 |
aaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgca |
221 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
54423637 |
aaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctattttttcttttgttttgcagcgca |
54423736 |
T |
|
| Q |
222 |
tatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttcttggaaaattcatttgttaataagtgg |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
54423737 |
tatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttcttgggaaatccatttgttaataagtgg |
54423836 |
T |
|
| Q |
322 |
acgaagacgatt |
333 |
Q |
| |
|
|||||||||||| |
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|
| T |
54423837 |
acgaagacgatt |
54423848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 22 - 283
Target Start/End: Complemental strand, 20127580 - 20127319
Alignment:
| Q |
22 |
agggccaatgcggtcgccgttaaaaatgacgtgatattcaacggaggtgatgcgcatcatcatccaggaagtccactgtgaactgaaccccattttaaat |
121 |
Q |
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|
||||||||||||||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
20127580 |
agggccaatgcggtcaccattaaaaatgacgtggtattcaacggaggtgatgcacatcatcatccaggaggtccattgtgaactgaaacccattttaagg |
20127481 |
T |
|
| Q |
122 |
aaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgca |
221 |
Q |
| |
|
| ||| | ||||||||| | |||| |||||||||| |||||||||||||| |||||||| || |||||||| |||||||| ||||||||||||||||||| |
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|
| T |
20127480 |
agaatggatttgaggtaaggccaacttacactatcaaatgccttggatatatcaagttttagtgccacctcgcctattttcccttttgttttgcagcgca |
20127381 |
T |
|
| Q |
222 |
tatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaag |
283 |
Q |
| |
|
||||||| || ||||| || || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20127380 |
tatgatggaggacttcaaaagcggttagcgcattatccatgattgagcgagaatgcacaaag |
20127319 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 294
Target Start/End: Original strand, 27645594 - 27645764
Alignment:
| Q |
124 |
aatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcata |
223 |
Q |
| |
|
||||||||| |||||| |||| | |||||||| || ||||| || || |||||||| |||||||||||||| ||||| ||||| ||||||||||||||| |
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|
| T |
27645594 |
aatagctttaaggtacaaccagctaacactatcaaaagccttagagatatcaagtttcagagccacctcaccaattttacctttggttttgcagcgcata |
27645693 |
T |
|
| Q |
224 |
tgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttc |
294 |
Q |
| |
|
||||| | | ||| || || |||| |||||||||||||| ||||| || || || || ||||||||||| |
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|
| T |
27645694 |
tgatgtaagatttcaaaggccgttaaagcattatccatgatagagcgggagtgaacgaatgctgcctgttc |
27645764 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 13190455 - 13190709
Alignment:
| Q |
22 |
agggccaatgcggtcgccgttaaaaatgacgtgatattcaacggaggtgatgcgcatcatcatccaggaagtccactgtgaactgaaccccattttaaat |
121 |
Q |
| |
|
|||| |||| ||||| ||||| ||||| ||||||||||| || || |||||| ||||| |||||| || ||| ||||||| || ||||| ||| |
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|
| T |
13190455 |
agggtcaattcggtcaccgttgaaaataacgtgatattcgacagacatgatgcacatcaacatccaagagacccattgtgaacaaaatcccatcttagta |
13190554 |
T |
|
| Q |
122 |
aaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgca |
221 |
Q |
| |
|
| |||||||| |||||| ||||| ||| ||||| || || || ||||| |||||||| | ||| || | ||||| ||| ||||| ||||| |||| |
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|
| T |
13190555 |
agaatagcttcgaggtatgaccagcttatgctatcaaaagcttttgatatatcaagtttcatagcgacgttacctagtttccctttgtgcttgcaccgca |
13190654 |
T |
|
| Q |
222 |
tatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatg |
276 |
Q |
| |
|
|||| ||||||| ||| |||||||||| |||||||||||||| || |||||||| |
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|
| T |
13190655 |
tatggtgaagaatttcaaatgctgttaaagcattatccatgatggaacgagaatg |
13190709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 12461045 - 12461121
Alignment:
| Q |
149 |
acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg |
225 |
Q |
| |
|
||||| || ||||| |||||||| |||||||| | ||| ||||||||| |||||||||||| ||| || |||||||| |
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|
| T |
12461045 |
acactgtcaaatgctttggatatatcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg |
12461121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 324
Target Start/End: Complemental strand, 44137619 - 44137419
Alignment:
| Q |
124 |
aatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcata |
223 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| || || ||||| || ||||| | || | ||| || ||||| ||||||||||| ||||||| |||||| |
|
|
| T |
44137619 |
aatagcttcaaggtaggaccaacttacactgtcaaaagccttagagatgtctaacttcaaagcaacttcaccaatttttcctttccttttgcaacgcata |
44137520 |
T |
|
| Q |
224 |
tgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttcttggaaaattcatttgttaataagtggac |
323 |
Q |
| |
|
|| || ||| || |||| ||||| || ||||||||||| || ||||| || |||||||| | ||||||| | | || ||||||||||| || |||| |
|
|
| T |
44137519 |
tggtggagagtctcaaatgttgttaaagcgttatccatgatagaacgagagtgaacaaaggcagactgttctggtgagatccatttgttaatgagaggac |
44137420 |
T |
|
| Q |
324 |
g |
324 |
Q |
| |
|
| |
|
|
| T |
44137419 |
g |
44137419 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 9182994 - 9183133
Alignment:
| Q |
149 |
acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta |
248 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| ||||| || |||||| ||||||||| | ||||||||||||| ||| |||| ||| || ||||| | |
|
|
| T |
9182994 |
acactatcaaaagccttcgaaatgtcaagttttagagctacatcaccttgttttcctttattcttgcagcgcatataatgtagaatttcaaaggctgtga |
9183093 |
T |
|
| Q |
249 |
gcgcattatccatgattgagcgagaatgcacaaaggctgc |
288 |
Q |
| |
|
|||| |||||||| || || |||||| ||||||| ||||| |
|
|
| T |
9183094 |
gcgcgttatccattatcgaacgagaaggcacaaacgctgc |
9183133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 288
Target Start/End: Complemental strand, 11625279 - 11625140
Alignment:
| Q |
149 |
acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta |
248 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| ||||| || |||||| |||||||||| | ||||||||||||| ||| || | ||| || ||||| | |
|
|
| T |
11625279 |
acactatcaaaagccttcgaaatgtcaagttttagagctacatcacctttttttcctttattcttgcagcgcatataatgtagtatttcaaaggctgtga |
11625180 |
T |
|
| Q |
249 |
gcgcattatccatgattgagcgagaatgcacaaaggctgc |
288 |
Q |
| |
|
|||| |||||||| || || |||||| ||||||| ||||| |
|
|
| T |
11625179 |
gcgcgttatccattatcgaacgagaaggcacaaacgctgc |
11625140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 10161217 - 10161356
Alignment:
| Q |
149 |
acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta |
248 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| ||||| || |||||| ||||||||| | ||||||||||||| ||| |||| ||| || ||||| | |
|
|
| T |
10161217 |
acactatcaaaagccttcgaaatgtcaagttttagagctacatcaccttgttttcctttattcttgcagcgcatataatgtagaatttcaaaggctgtga |
10161316 |
T |
|
| Q |
249 |
gcgcattatccatgattgagcgagaatgcacaaaggctgc |
288 |
Q |
| |
|
|||| |||||||| || || |||||| ||||||| ||||| |
|
|
| T |
10161317 |
gcgcgttatccattatcgaacgagaaggcacaaacgctgc |
10161356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 16861059 - 16860983
Alignment:
| Q |
149 |
acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg |
225 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| | ||| ||||||||| |||||||||||| ||| || |||||||| |
|
|
| T |
16861059 |
acactgtcaaatgctttggatatgtcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg |
16860983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 21740989 - 21741103
Alignment:
| Q |
168 |
atatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattga |
267 |
Q |
| |
|
|||| |||||||| | ||||||||||||| | || ||||| | ||| || |||||||||||||||| |||| |||| | || ||||| ||||| || || |
|
|
| T |
21740989 |
atatatcaagtttcaaagccacctcacctttcttccctttcgatttacaacgcatatgatgaagaatttcgtatgccatcagagcattgtccataatgga |
21741088 |
T |
|
| Q |
268 |
gcgagaatgcacaaa |
282 |
Q |
| |
|
| ||||||| ||||| |
|
|
| T |
21741089 |
gagagaatggacaaa |
21741103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 1937 - 2013
Alignment:
| Q |
149 |
acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg |
225 |
Q |
| |
|
||||| || ||||| |||||||| |||||||| | ||| ||||||||| |||||||||||| ||| || |||||||| |
|
|
| T |
1937 |
acactgtcaaatgctttggatatatcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg |
2013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 238965 - 239092
Alignment:
| Q |
161 |
gccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatcca |
260 |
Q |
| |
|
||||||||||| ||||| || | ||||||||| || ||||| |||||| | ||||| |||||| ||||||| ||| || |||| ||| |||||||||| |
|
|
| T |
238965 |
gccttggatatatcaagctttaaagccacctcgccaattttaccttttttcttgcatcgcataaagtgaagaatttcaaaggctgatagagcattatcca |
239064 |
T |
|
| Q |
261 |
tgattgagcgagaatgcacaaaggctgc |
288 |
Q |
| |
|
|||| || | ||| | ||||||||||| |
|
|
| T |
239065 |
tgatggatctagatggaacaaaggctgc |
239092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 51142253 - 51142295
Alignment:
| Q |
47 |
atgacgtgatattcaacggaggtgatgcgcatcatcatccagg |
89 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
51142253 |
atgacatgatattcaactgaggtgatgcacatcatcatccagg |
51142295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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