View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_low_34 (Length: 251)
Name: NF19974_low_34
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 90 - 241
Target Start/End: Original strand, 9170940 - 9171093
Alignment:
| Q |
90 |
atcttgggagaagctttaatgttccaaattaaatcccaacaacccggtttatgcaagtgagtattgtcaacaatttct--catgcatattatgtaagcat |
187 |
Q |
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| T |
9170940 |
atcttgggggaaactttaatgttccaaattaaatcccaacaacccgatttatgcaagtgagtattgtcaacaatttctttcatacatattatgtaagcat |
9171039 |
T |
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| Q |
188 |
tacgaatggaatacataccatttttcccaacctttcaaatcaatctatcctatg |
241 |
Q |
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| T |
9171040 |
tacgaacggaatacataccatttttcccaacctttcaaatcaatctatcctatg |
9171093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9170423 - 9170488
Alignment:
| Q |
1 |
caagtcataccttatggggccggtttgacctatcgattcgaagccgtaagtgttgacctatgtggg |
66 |
Q |
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| T |
9170423 |
caagtcataccttatggggccggtttgacctatcgattcgaagccgtaagtgttgacctatgtggg |
9170488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 12223842 - 12223703
Alignment:
| Q |
101 |
agctttaatgttccaaattaaatcccaacaacccggtttatgcaagtgagtattgtcaacaatttc--tcatgcatattatgtaagcattacgaatggaa |
198 |
Q |
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| T |
12223842 |
agctttcatgttccaaattaaatcccaacgacccgatttatgcaaatgagtattgtcaacaatttcattcatacatattttgtaagcactacaaacagaa |
12223743 |
T |
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| Q |
199 |
tacataccatttttcccaacctttcaaatcaatctatcct |
238 |
Q |
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| T |
12223742 |
tacctaccatttttgtcagtcttccaaaccaatctatcct |
12223703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 12225978 - 12225891
Alignment:
| Q |
101 |
agctttaatgttccaaattaaatcccaacaacccggtttatgcaagtgagtattgtcaacaatttc--tcatgcatattatgtaagca |
186 |
Q |
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| T |
12225978 |
agctttgatgttccaaattaaatcccaacgatccagtttatccaaatgagtattgtcaacaatttcgttcatacatattctgtaagca |
12225891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 38246953 - 38247077
Alignment:
| Q |
90 |
atcttgggagaagctttaatgttccaaattaaatcccaacaacccggtttatgcaagtgagtattgtcaacaatttc--tcatgcatattatgtaagcat |
187 |
Q |
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| T |
38246953 |
atcttggggggagatttaatgttccaaattaagtcccaacgaccagatttatgcaaatgaatattgtcaacaatttcattcatacatattctgtaagcac |
38247052 |
T |
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| Q |
188 |
tacgaatggaatacataccattttt |
212 |
Q |
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| |||| | ||||| |||||||||| |
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| T |
38247053 |
tgcgaacgaaatacctaccattttt |
38247077 |
T |
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