View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19974_low_37 (Length: 247)
Name: NF19974_low_37
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 22788372 - 22788582
Alignment:
| Q |
17 |
tattgaccttcaatcatttgtggaagaaattagtttggttgttaagatttaaattttgttttgataatgccatattggctcctaacatttctatatgatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
22788372 |
tattgaccttcaatcatttgtggaagaaattagtttggttgttaagatttgaattttgttttgataatgtcatattggctcctaacatttctatatgaat |
22788471 |
T |
|
| Q |
117 |
cgttaacgatagtactaatatcaaaataagaatatggtatgtccaacccgtgatctttgtgattttatcatcttaattttagtttttgaatgaatgaatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22788472 |
cgttaacgatagtactaatatcaaaataagaatatggtatgtccaacccgtgatcttcgtgattttatcatcttaattttagtttttgaatgaatgaatt |
22788571 |
T |
|
| Q |
217 |
tcttttacggt |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
22788572 |
tcttttacggt |
22788582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 32088638 - 32088719
Alignment:
| Q |
32 |
atttgtggaagaaattagtttggttgttaagatttaaattttgttttgataatgccatattggctcctaacatttctatatg |
113 |
Q |
| |
|
|||||||||||||| || |||| |||||| ||||| |||||||||||||||| ||||||| || |||| |||| |||||| |
|
|
| T |
32088638 |
atttgtggaagaaactattttgattgttaggatttgaattttgttttgataacttcatattgacttctaatatttttatatg |
32088719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 6999612 - 6999666
Alignment:
| Q |
29 |
atcatttgtggaagaaattagtttggttgttaagatttaaattttgttttgataa |
83 |
Q |
| |
|
||||||||||||||| ||||||||| ||| || ||||||||||| ||||| |||| |
|
|
| T |
6999612 |
atcatttgtggaagagattagtttgattgctatgatttaaatttcgttttcataa |
6999666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University