View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_low_4 (Length: 530)
Name: NF19974_low_4
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 24 - 515
Target Start/End: Complemental strand, 11859664 - 11859167
Alignment:
| Q |
24 |
tttgcttcatcatcaacgtcgctacgatcacaatcaaaagaggaactccaccacaaccctccacgatctcccgttcatgttca------ggttcaatggt |
117 |
Q |
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| T |
11859664 |
tttgcttcttcattaccatcgctacgatcacaatcaaaagaggaactccagcacaaccttccacaatctcccgttcaggttcacgttcgggttcagtggt |
11859565 |
T |
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| Q |
118 |
gctttgttcttttttggctgaagtaattggtccatgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtcta |
217 |
Q |
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| T |
11859564 |
gctttgcacttttttggttgaagtaattggtccatgaatctgctgaaacaatgaccaagattcctcttgattaagcccctgcaacttcaaaacatgtcta |
11859465 |
T |
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| Q |
218 |
gtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaact |
317 |
Q |
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| T |
11859464 |
gcagcaattttgttggcaacatggctgcttcgtgttgttgtaacaagtatgacggtatcagtccttccacctgcagcctgcgctaatttcttctgcaact |
11859365 |
T |
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| Q |
318 |
tcttgagatcatcattcttaatctcaattcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatgga |
417 |
Q |
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| T |
11859364 |
tctcgagatcaccattctcaatctcaattcgcaaatcatctataacaagtaagacgcgtttcttatgaacataccgatcagtaacgctttttactatgga |
11859265 |
T |
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| Q |
418 |
ttcaacatcaaattggtgatgagggccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagtt |
515 |
Q |
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| T |
11859264 |
ttcaacatcaaattggtgatgaagaccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagtt |
11859167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 107 - 370
Target Start/End: Complemental strand, 11827434 - 11827171
Alignment:
| Q |
107 |
ggttcaatggtgctttgttcttttttggctgaagtaattggtccatgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttca |
206 |
Q |
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| T |
11827434 |
ggttcgatggtgctttgtgcttttttggttgaagtaattggtccataaatctgctgaaacaatgaccaagattccttttgattaagcccctgcaacttca |
11827335 |
T |
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| Q |
207 |
aaacaagtctagtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaattt |
306 |
Q |
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| T |
11827334 |
aaacatatgtagcaccaatattgttggcgacatggttgctac---atgtggtaatgagtatcacggtattggtacggccaccagcaacctccatcaattt |
11827238 |
T |
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| Q |
307 |
cttctgcaacttcttgagatcatca---ttcttaatctcaattcgcaaatcatctataacaagtaag |
370 |
Q |
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| T |
11827237 |
cttctgtaacttctcgaggtcatcatgcttattaatcgcaattctcaaatcatctataataagtaag |
11827171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 148 - 429
Target Start/End: Complemental strand, 12038317 - 12038039
Alignment:
| Q |
148 |
tccatgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgctt |
247 |
Q |
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| T |
12038317 |
tccatgaatttcctcaaacaaggaccaagaatcctcttgattaagcccctgcaacttcaaaacatgtccagcagcaatgttgtcggcgacatggttacta |
12038218 |
T |
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| Q |
248 |
cgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattct---taatctcaa |
344 |
Q |
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| T |
12038217 |
cgtgtagt---aatgagtatggccgtatcagcacggccaccaacagcttcagttaatttcttctgcaacttctcaagataatcaggctcattaatctcaa |
12038121 |
T |
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| Q |
345 |
ttcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaa |
429 |
Q |
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| T |
12038120 |
atctcaaatcatctataacaagtaagaggcgtttctcatgatgagac---tcggcaacactttttgctatagattcaacatcaaa |
12038039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 515
Target Start/End: Complemental strand, 12038034 - 12037965
Alignment:
| Q |
446 |
ttgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagtt |
515 |
Q |
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| T |
12038034 |
ttgatccaaattggttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagtt |
12037965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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