View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_low_40 (Length: 226)
Name: NF19974_low_40
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_low_40 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: scaffold0136 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 17199 - 16995
Alignment:
| Q |
17 |
attctcttcaccaagttgtcttccttctgtgacattgttaggtttccaaggaaaacattcagtatcatcaccctttaacttacacggtcctgatttatct |
116 |
Q |
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| T |
17199 |
attctcttcaccaagttgtcttccttctgtgacattgttaggtttccaaggaaaacattctgtatcatcaccctttaacttacacggtcctgatttatct |
17100 |
T |
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| Q |
117 |
attttccaacgacattctcctttgcaatctttatcatctcgtgattcaacataaatgtcaaaacgtttaagttcattcatccaagaaaatccacaaaagt |
216 |
Q |
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| T |
17099 |
attttccaacgacattctcctttgcaatctttatcatctcgtgattcaacataaatgtcaaagcgtttaagttcattcatccaagaaaatccacaaaagt |
17000 |
T |
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| Q |
217 |
ataat |
221 |
Q |
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| T |
16999 |
ataat |
16995 |
T |
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Back To:
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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 34182454 - 34182254
Alignment:
| Q |
21 |
tcttcaccaagttgtcttccttctgtgacattgttaggtttccaaggaaaacattcagtatcatcaccctttaacttacacggtcctgatttatctattt |
120 |
Q |
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|||||||||| ||| ||||||||||| |||| ||||| |||||| ||| |||||||||||| || || ||| ||||| ||| || |||||| |||| |
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| T |
34182454 |
tcttcaccaaattgcattccttctgtggcatttttaggattccaattaaagcattcagtatcaccatcccttacgttacatggtgctaatttatttattg |
34182355 |
T |
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| Q |
121 |
tccaacgacattctcctttgcaatctttatcatctcgtgattcaacataaatgtcaaaacgtttaagttcattcatccaagaaaatccacaaaagtataa |
220 |
Q |
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| T |
34182354 |
tccaatgacaatctcctttgcaagttttgtcatctcgtacttcaacataaatgtcaaagtattgaatttctttcatccaatgaaatccgcaaaagtataa |
34182255 |
T |
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| Q |
221 |
t |
221 |
Q |
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| T |
34182254 |
t |
34182254 |
T |
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