View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_low_5 (Length: 530)
Name: NF19974_low_5
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 279 - 510
Target Start/End: Complemental strand, 49096436 - 49096208
Alignment:
| Q |
279 |
ctcaatcaaattacaagttagtaataaattttattgatcgtgatgggaaactacgtttcatgcaccttagcaccaccgttgatgaggaacgcaaaagcaa |
378 |
Q |
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| T |
49096436 |
ctcaatcaaattacaag---gtaataaattttattgatcgtgatgggtaactacgtttcatgcaccttagcaccaccgttgatgaggaacgcaaaagcaa |
49096340 |
T |
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| Q |
379 |
caagagtaatccttccaacaggagaagtgaaacaattcagagaaatcatgaaagctgctgagcttatgttagagaatccaaattatttcttagtcaactc |
478 |
Q |
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| T |
49096339 |
caagagtaatccttccaacaggagaagttaaacaattcagagaaatcatgaaagctgctgagcttatgttagagaatccaaattatttcttagtcaactc |
49096240 |
T |
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| Q |
479 |
tcgatctcttcatatttctacaagattttctc |
510 |
Q |
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| T |
49096239 |
tcgatctcttcatatttctacaagattttctc |
49096208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 49096690 - 49096545
Alignment:
| Q |
8 |
cagcacagacacacaccggtcaacaaatctcaatctgacacacgcacatgctaatttcatttcattgcataaattacaatatcatgcacattcaatcatc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49096690 |
cagcacagacacacaccggtcaacaaatctcaatctgacacacgcacatgctaatttcatttcattgcataaattacaatatcatgcacattcaataatc |
49096591 |
T |
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| Q |
108 |
aatatactattccaataatattccattgactatactcttccttaat |
153 |
Q |
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| T |
49096590 |
aatatactattccaataatattccattgactatactcttccttaat |
49096545 |
T |
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