View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19974_low_6 (Length: 524)

Name: NF19974_low_6
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19974_low_6
NF19974_low_6
[»] chr7 (3 HSPs)
chr7 (3-509)||(31832245-31832751)
chr7 (10-56)||(30751454-30751500)
chr7 (71-112)||(2047987-2048028)
[»] chr6 (1 HSPs)
chr6 (18-57)||(32975923-32975962)
[»] chr3 (1 HSPs)
chr3 (18-57)||(3757993-3758032)
[»] chr2 (2 HSPs)
chr2 (12-51)||(15866760-15866799)
chr2 (18-50)||(44216864-44216896)
[»] chr8 (1 HSPs)
chr8 (18-56)||(41620378-41620416)
[»] scaffold0103 (1 HSPs)
scaffold0103 (18-51)||(51513-51546)
[»] chr5 (1 HSPs)
chr5 (70-107)||(32059308-32059345)


Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 3 - 509
Target Start/End: Original strand, 31832245 - 31832751
Alignment:
Q  3 cataggggcttgtgcataagttatttttgtaacaaaatataaaataaagccaaacaaagtttttcgtataaactctctcaaagagtatcacaaatactta 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31832245 cataggggcttgtgcataagttatttttgtaacaaaatataaaataaagccaaacaaagtttttcgtataaactctctcaaacagtatcacaaatactta 31832344  T
Q  103 tgcaagtagaaaaattctcaaatgaaaactgttaattaagccaagcttgcaaaaggacgtatactggcgcaaaacatgataacaatatcctaatggtggc 202  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  31832345 tgcaagtagataaattctcaaatgaaaactgttaattaagccaagcttgcaaaaggacgtatactagggcaaaacatgataacaatatcctaatggtggc 31832444  T
Q  203 acaaactcaaataattttggactgtatatcagttataaagtcatatagatgaattttgaaaactacattgtnnnnnnntatgccatacacagtttgttca 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||       ||||||||||||||||||||||    
T  31832445 acaaactcaaataattttggactgtatatcagttataaagtcatacaaatgaattttgaaaattacattgtaaaagaatatgccatacacagtttgttca 31832544  T
Q  303 atctatttgttccgatctttgtcttaattaaagaacgatgttcacagtcggaaaataaagaaagaaaacgagcaaggtaattcttaccttcaaggtacca 402  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31832545 atctatttattccgatctttgtcttaattaaagaacgatgttcacagtcggaaaataaagaaagaaaacgagcaaggtaattcttaccttcaaggtacca 31832644  T
Q  403 caacaagaacaaggtgtatccatgtttaagtcttcatcttcatcgtgacatattcgacattgtaccgatgtattaggagaatatgagtcaatttgatcat 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31832645 caacaagaacaaggtgtatccatgtttaagtcttcatcttcatcgtgacatattcgacattgtaccgatgtattaggagaatatgagtcaatttgatcat 31832744  T
Q  503 ccatttt 509  Q
    |||||||    
T  31832745 ccatttt 31832751  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 30751454 - 30751500
Alignment:
Q  10 gcttgtgcataagttatttttgtaacaaaatataaaataaagccaaa 56  Q
    ||||||| ||||  |||||||||||||||||||||||||||| ||||    
T  30751454 gcttgtgaataaactatttttgtaacaaaatataaaataaagtcaaa 30751500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 2048028 - 2047987
Alignment:
Q  71 taaactctctcaaagagtatcacaaatacttatgcaagtaga 112  Q
    |||||||||||||||||||||||||||  |||||| ||||||    
T  2048028 taaactctctcaaagagtatcacaaatgtttatgctagtaga 2047987  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 32975923 - 32975962
Alignment:
Q  18 ataagttatttttgtaacaaaatataaaataaagccaaac 57  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  32975923 ataagttatttctgtaacaaaatataaaataaagtcaaac 32975962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 3757993 - 3758032
Alignment:
Q  18 ataagttatttttgtaacaaaatataaaataaagccaaac 57  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  3757993 ataagctatttttgtaacaaaatataaaataaagtcaaac 3758032  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 15866799 - 15866760
Alignment:
Q  12 ttgtgcataagttatttttgtaacaaaatataaaataaag 51  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  15866799 ttgtgtataagttatttttgtaacaaaatgtaaaataaag 15866760  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 44216864 - 44216896
Alignment:
Q  18 ataagttatttttgtaacaaaatataaaataaa 50  Q
    ||||||||||||| |||||||||||||||||||    
T  44216864 ataagttatttttataacaaaatataaaataaa 44216896  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 41620416 - 41620378
Alignment:
Q  18 ataagttatttttgtaacaaaatataaaataaagccaaa 56  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  41620416 ataagttatttttgtaacaaaagataaaataaagtcaaa 41620378  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 51513 - 51546
Alignment:
Q  18 ataagttatttttgtaacaaaatataaaataaag 51  Q
    ||||||||||||| ||||||||||||||||||||    
T  51513 ataagttatttttataacaaaatataaaataaag 51546  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 32059345 - 32059308
Alignment:
Q  70 ataaactctctcaaagagtatcacaaatacttatgcaa 107  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  32059345 ataaactctctcaaatagtatcacaagtacttatgcaa 32059308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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