View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19974_low_7 (Length: 515)
Name: NF19974_low_7
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19974_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 274 - 497
Target Start/End: Original strand, 14417282 - 14417505
Alignment:
| Q |
274 |
ccgagcaatattgttttttactttcaaataacgataggaagtgacattatttaatataaacataacatatgaaaatgcgtgtgacacattcaacatctaa |
373 |
Q |
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| T |
14417282 |
ccgagcaatattgttttttactttcaaataactataggaagtgacattatttaatataaacataacacatgaaaatgcgtgtgacatattcaacatctaa |
14417381 |
T |
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| Q |
374 |
atatagttgcaataatgaaaataaatatgcttaaatggtgccattagtgatttaaattttatgatcccaccattgttgtatgagtgatcctacttaatat |
473 |
Q |
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| T |
14417382 |
atatagttgcaataatgaaaataaatatgcttaaatggtgccattaatgatttaaattttatgatcccacaattgttgtatgagtgatcctacttaatat |
14417481 |
T |
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| Q |
474 |
catttaccataatatttactatta |
497 |
Q |
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| T |
14417482 |
catttaccataatatttactatta |
14417505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 14417004 - 14417221
Alignment:
| Q |
7 |
tccaagaatatttgaattaggttccactagagacaccttaaagtaatccattctcttagagccattattgttgtcaaatacttctaacattcctgagaga |
106 |
Q |
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| T |
14417004 |
tccaaaaacatttgaattaggttccactagagacaccgtaaagtaattcattctcttaaagccattattgttgtcaaatacttctaacattcctgagaga |
14417103 |
T |
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| Q |
107 |
gataaaatctcaaattgaccctgtgatgaaaaataacatcataggaagaaaaatgaac-----------tagttatgtaaaacaactatcacagtatcat |
195 |
Q |
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| T |
14417104 |
gataaaatctcaaattgaccctgtgatgaaaaataacatcatagaaagaaaaatgaacaaaaacacatttagttatgtaaaacaactatcatagtatcat |
14417203 |
T |
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| Q |
196 |
aatgacattttcacatgt |
213 |
Q |
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| T |
14417204 |
aatgacattttcacatgt |
14417221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 14427077 - 14427222
Alignment:
| Q |
21 |
aattaggttccactagagacaccttaaagtaatccattctcttagagccattattgttgtcaaatacttctaacattcctgagagagataaaatctcaaa |
120 |
Q |
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||||||| ||||||| |||||||||||||||| ||||| ||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
14427077 |
aattaggatccactaaagacaccttaaagtaacccattgtcttaaagccatttttgttgtcaaattcttctaacattcctgatagagataaaatctcaaa |
14427176 |
T |
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| Q |
121 |
ttgaccctgtgatgaaaaataacatcataggaagaaaaatgaacta |
166 |
Q |
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| T |
14427177 |
tcgaccctgtaatgaaaaataacatcataagaagaaaattgaacta |
14427222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 3410020 - 3410148
Alignment:
| Q |
30 |
ccactagagacaccttaaagtaatccattctcttagagccattattgttgtcaaatacttctaacattcctgagagagataaaatctcaaattgaccctg |
129 |
Q |
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| T |
3410020 |
ccaccagagacaccttaaagttacccattcttttacaaccactattgttgtcacatacttctaacatgcctgatagggatacaagctcaaatcgaccctg |
3410119 |
T |
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| Q |
130 |
tgatgaaaaataacatcataggaagaaaa |
158 |
Q |
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| T |
3410120 |
ggataaaaaaatacatcacagtaagaaaa |
3410148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 452
Target Start/End: Original strand, 3410387 - 3410452
Alignment:
| Q |
388 |
atgaaaataaatatgcttaaatggtgccattagtgattt-aaattttatgatcccaccattgttgt |
452 |
Q |
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| T |
3410387 |
atgaaaatagatatgcctaaattgtgccaataatgatttgaaaatgtatgatcccaccattgttgt |
3410452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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