View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19974_low_9 (Length: 416)

Name: NF19974_low_9
Description: NF19974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19974_low_9
NF19974_low_9
[»] chr1 (7 HSPs)
chr1 (3-403)||(4963827-4964231)
chr1 (146-403)||(4150248-4150498)
chr1 (137-403)||(10597717-10597981)
chr1 (131-169)||(39393375-39393413)
chr1 (132-169)||(1547280-1547317)
chr1 (132-169)||(37619042-37619079)
chr1 (133-169)||(421386-421422)
[»] chr8 (3 HSPs)
chr8 (146-297)||(6446566-6446717)
chr8 (318-403)||(6446455-6446541)
chr8 (131-169)||(39099266-39099304)
[»] chr2 (4 HSPs)
chr2 (133-169)||(31570903-31570939)
chr2 (135-169)||(31861895-31861929)
chr2 (132-169)||(2325539-2325576)
chr2 (134-163)||(19073356-19073385)
[»] chr5 (4 HSPs)
chr5 (132-163)||(22974229-22974260)
chr5 (135-169)||(15724490-15724524)
chr5 (132-169)||(8742028-8742065)
chr5 (132-169)||(19119856-19119893)
[»] chr3 (5 HSPs)
chr3 (134-169)||(7327634-7327669)
chr3 (132-169)||(53175711-53175748)
chr3 (129-169)||(35844311-35844351)
chr3 (133-169)||(40640648-40640684)
chr3 (131-159)||(42665565-42665593)
[»] chr6 (2 HSPs)
chr6 (135-169)||(7235184-7235218)
chr6 (132-169)||(4318973-4319010)
[»] chr4 (2 HSPs)
chr4 (323-369)||(51169948-51169994)
chr4 (133-169)||(38812274-38812310)
[»] scaffold0312 (1 HSPs)
scaffold0312 (133-169)||(9149-9185)
[»] chr7 (3 HSPs)
chr7 (133-169)||(18797302-18797338)
chr7 (133-169)||(26524479-26524515)
chr7 (133-169)||(40381938-40381974)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 3 - 403
Target Start/End: Complemental strand, 4964231 - 4963827
Alignment:
Q  3 atacaaatatctatacaannnnnnnngacacaaacgagtatatagttcttaactagtgatacatcgccaggctttatactttcttaactagtgtagatta 102  Q
    ||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  4964231 atacaaatatctatacaattttttttgacacaaacgagtatatagttcttaactagtgatacatcgccaggctttatattttcttaactagtgtagataa 4964132  T
Q  103 aagtaaccatattctttatgaatgttaataaa----ggaaaattctatggtgaagttatgagaattactttaaaatttcgacctcaaatttaatgtcatt 198  Q
    ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  4964131 aagtaaccatattctttatgaatgttaataaataaaggaaaattctatggtgaagttatgagaattacttcaaaatttcgaccttaaatttaatgtcatt 4964032  T
Q  199 tgatttttctgtattttcgaatgcaagtaagtagtcgaatatacacaattcagtgaaaatatgataaatctaacacaaacataatccttatcctgaatc- 297  Q
    | |||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  4964031 taatttttgtgtattttcgaatgcaagtaagcagtcgaatttacacaattcagtgaaaa-atgataaatctaacacaaacataatccttatcctgaatct 4963933  T
Q  298 nnnnnnnnnnnnnnnnnnnctgaattagcaaattttattgaaagcaaatccgtacaagacgcacaagctgcaaaattgtaaggaaaattacaaaggttcc 397  Q
                        |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4963932 tttacttttttttatttttttgaattagcaaattttattgaaagcaaacccgtacaagacgcacaagctgcaaaattgtaaggaaaattacaaaggttcc 4963833  T
Q  398 atatat 403  Q
    ||||||    
T  4963832 atatat 4963827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 146 - 403
Target Start/End: Complemental strand, 4150498 - 4150248
Alignment:
Q  146 tggtgaagttatgagaattactttaaaatttcgacctcaaatttaatgtcatttgatttttctgtattttcgaatgcaagtaagtagtcgaatatacaca 245  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||    
T  4150498 tggtgaagtcatgagaattacttcaaaatttcgacctcaaatttaatgtcatttgatatttgtgtattttcgaatgcgaataagtagtcgaatatacaca 4150399  T
Q  246 attcagtgaaaatatgataaatctaacacaaacataatccttatcctgaatcnnnnnnnnnnnnnnnnnnnctgaattagcaaattttattg-aaagcaa 344  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||                    |||||||||||||||||||| |||||||    
T  4150398 atttagtgaaaatatgataaatctaacacaaacataatccttatcctaaatcctttattttttt--------tgaattagcaaattttattgaaaagcaa 4150307  T
Q  345 atccgtacaagacgcacaagctgcaaaattgtaaggaaaattacaaaggttccatatat 403  Q
    | |||||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  4150306 acccgtacaagacgcacaagctgcaaaatcctaaggaaaattacaaaggtttcatatat 4150248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 137 - 403
Target Start/End: Original strand, 10597717 - 10597981
Alignment:
Q  137 aaaattctatggtgaagttatgagaattactttaaaatttcgacctcaaatttaatgtcatttgatttttctgtattttcgaatgcaagtaagtagtcga 236  Q
    |||||| |||| |||||| |||||||||| |||||||||||||  | ||||||||||||||||||||||| | ||||||||||||| | |||||||||||    
T  10597717 aaaattttatgatgaagtcatgagaattattttaaaatttcgattttaaatttaatgtcatttgatttttgtatattttcgaatgcgaataagtagtcga 10597816  T
Q  237 atatacacaattcagtgaaaatatgataaatctaacacaaacataatccttatcctgaatcnnnnnnnnnnnnnnnnnnnctgaattagcaaattttatt 336  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||                    |||||||||||||||||||    
T  10597817 atatacacaattcaatgaaaatatgataaagctaacacaaacataatccttatcctgaatccttcatttttctatttttt-tgaattagcaaattttatt 10597915  T
Q  337 g-aaagcaaatccgtacaagacgcacaagctgcaaaattgtaaggaaaattacaaaggttccatatat 403  Q
    | |||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||    
T  10597916 gaaaagcaaacccgtacaagacgcacaagctgcaaaatcgta--gaaaattacaaaggttccatatat 10597981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 39393375 - 39393413
Alignment:
Q  131 taaaggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  39393375 taaaggaaaattctacggtgaagttatgagaatgacttt 39393413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 1547280 - 1547317
Alignment:
Q  132 aaaggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  1547280 aaaggaaaattctatggtgaagtcatgagaatgacttt 1547317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 37619079 - 37619042
Alignment:
Q  132 aaaggaaaattctatggtgaagttatgagaattacttt 169  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  37619079 aaaggaaaattctatggtgaagttataagaatgacttt 37619042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 421386 - 421422
Alignment:
Q  133 aaggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  421386 aaggaaaattctatgatgaagttatgagaatgacttt 421422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 146 - 297
Target Start/End: Complemental strand, 6446717 - 6446566
Alignment:
Q  146 tggtgaagttatgagaattactttaaaatttcgacctcaaatttaatgtcatttgatttttctgtattttcgaatgcaagtaagtagtcgaatatacaca 245  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6446717 tggtgaagtcatgagaattacttcaaaatttcgacctcaaatttaatgtcatttgatttttgtgtattttcgaatgcaagtaagtagtcgaatatacaca 6446618  T
Q  246 attcagtgaaaatatgataaatctaacacaaacataatccttatcctgaatc 297  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  6446617 attaagtgaaaatatgataaatctaacacaaacataatccttattctgaatc 6446566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 6446541 - 6446455
Alignment:
Q  318 tgaattagcaaattttattgaaa-gcaaatccgtacaagacgcacaagctgcaaaattgtaaggaaaattacaaaggttccatatat 403  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6446541 tgaattagcaaattttattgaaaagcaaacccgtacaagacgcacaagctgcaaaatcgtaaggaaaattacaaaggttccatatat 6446455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 39099304 - 39099266
Alignment:
Q  131 taaaggaaaattctatggtgaagttatgagaattacttt 169  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  39099304 taaaggaaaattctatggtgaagtcatgagaatgacttt 39099266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 31570939 - 31570903
Alignment:
Q  133 aaggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||||||||||||||||||| |||||    
T  31570939 aaggaaaattctatggtgaagttatgagaataacttt 31570903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 31861895 - 31861929
Alignment:
Q  135 ggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||||||||||||||||| |||||    
T  31861895 ggaaaattctatggtgaagttatgagaatgacttt 31861929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 2325576 - 2325539
Alignment:
Q  132 aaaggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  2325576 aaaggaaaattctatggtgaagttatgtgaatgacttt 2325539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 19073356 - 19073385
Alignment:
Q  134 aggaaaattctatggtgaagttatgagaat 163  Q
    ||||||||||||||||||||||||||||||    
T  19073356 aggaaaattctatggtgaagttatgagaat 19073385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 22974260 - 22974229
Alignment:
Q  132 aaaggaaaattctatggtgaagttatgagaat 163  Q
    ||||||||||||||||||||||||||||||||    
T  22974260 aaaggaaaattctatggtgaagttatgagaat 22974229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 15724490 - 15724524
Alignment:
Q  135 ggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||||||||||||||||| |||||    
T  15724490 ggaaaattctatggtgaagttatgagaatgacttt 15724524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 8742065 - 8742028
Alignment:
Q  132 aaaggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  8742065 aaaggaaaattctatggtgaagtcatgagaatgacttt 8742028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 19119856 - 19119893
Alignment:
Q  132 aaaggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  19119856 aaaggaaaattctatggtgaagtcatgagaatgacttt 19119893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 7327669 - 7327634
Alignment:
Q  134 aggaaaattctatggtgaagttatgagaattacttt 169  Q
    |||||||||||||||||||||||||||||| |||||    
T  7327669 aggaaaattctatggtgaagttatgagaatgacttt 7327634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 53175711 - 53175748
Alignment:
Q  132 aaaggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  53175711 aaaggaaaattttatggtgaagttatgagaatgacttt 53175748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 35844311 - 35844351
Alignment:
Q  129 aataaaggaaaattctatggtgaagttatgagaattacttt 169  Q
    |||||||||||||||||||||||||| |||| ||| |||||    
T  35844311 aataaaggaaaattctatggtgaagtcatgataatgacttt 35844351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 40640684 - 40640648
Alignment:
Q  133 aaggaaaattctatggtgaagttatgagaattacttt 169  Q
    |||||||||||||||||||||| |||||||| |||||    
T  40640684 aaggaaaattctatggtgaagtcatgagaatgacttt 40640648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 159
Target Start/End: Complemental strand, 42665593 - 42665565
Alignment:
Q  131 taaaggaaaattctatggtgaagttatga 159  Q
    |||||||||||||||||||||||||||||    
T  42665593 taaaggaaaattctatggtgaagttatga 42665565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 7235218 - 7235184
Alignment:
Q  135 ggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||||||||||||||||| |||||    
T  7235218 ggaaaattctatggtgaagttatgagaatgacttt 7235184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 4319010 - 4318973
Alignment:
Q  132 aaaggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  4319010 aaaggaaaattctatggtgaagtcatgagaatgacttt 4318973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 51169948 - 51169994
Alignment:
Q  323 tagcaaattttattgaaagcaaatccgtacaagacgcacaagctgca 369  Q
    |||||||| |||||||||||||   ||||||||||||||||||||||    
T  51169948 tagcaaatattattgaaagcaagctcgtacaagacgcacaagctgca 51169994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 38812310 - 38812274
Alignment:
Q  133 aaggaaaattctatggtgaagttatgagaattacttt 169  Q
    |||||||||||||||||||||| |||||||| |||||    
T  38812310 aaggaaaattctatggtgaagtcatgagaatgacttt 38812274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 9185 - 9149
Alignment:
Q  133 aaggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  9185 aaggaaaattctatgatgaagttatgagaatgacttt 9149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 18797302 - 18797338
Alignment:
Q  133 aaggaaaattctatggtgaagttatgagaattacttt 169  Q
    |||||||||||||||||||||| |||||||| |||||    
T  18797302 aaggaaaattctatggtgaagtcatgagaatgacttt 18797338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 26524515 - 26524479
Alignment:
Q  133 aaggaaaattctatggtgaagttatgagaattacttt 169  Q
    |||||||||||||||||||||| |||||||| |||||    
T  26524515 aaggaaaattctatggtgaagtcatgagaatgacttt 26524479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 40381938 - 40381974
Alignment:
Q  133 aaggaaaattctatggtgaagttatgagaattacttt 169  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  40381938 aaggaaaattctacggtgaagttatgagaatgacttt 40381974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University