View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_high_14 (Length: 451)
Name: NF19975_high_14
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 28007195 - 28007616
Alignment:
| Q |
18 |
ctaattgtgggatttggatttggtgggtgggccagtatggtgaattttgtacaccaaattgacacatttggactcttcacaaaatgttaccaatgtcctc |
117 |
Q |
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| T |
28007195 |
ctaattgtgggatttggatttggtgggtgggccagtatggtgaattttgtacaccaaattgacacatttggactcttcacaaaatgttaccaatgtcctc |
28007294 |
T |
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| Q |
118 |
caccaacaccttctgttccaaccatgccacctcaccagatgaacgccaccgcgccttcaccgcatccccaccaccactgatatatcaagcattgtattgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28007295 |
caccaacaccttctgttccaaccatgccacctcaccagatgaacgccaccgcgccttcaccgcatcaccaccaccactgatatatcaagcattgtattgt |
28007394 |
T |
|
| Q |
218 |
acgatcttgatgaggcttcgatgaatcgattaatggatgatgagatgtatgtgttctacttgttatatggagaatgataaattagaaaaagtacttga-t |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |
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| T |
28007395 |
acgatcttgatgaggcttcgatgaatcgattaatggatgatgagatgtatgtgttctacttgctatatggagaatggtaaattagaaaaagtacttgatt |
28007494 |
T |
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| Q |
317 |
tagtcgcatcctgcatttttatgtattggttgtgtcatcaatttattataagccatgtattaatccttcttcaatttctttctatttatagctttaaggt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28007495 |
tagtcgcatcctgcatttttatgtattggttgtgtcatcaatttattataagccatgtattaatccttcttcaatttctttctatttatagctttaaggt |
28007594 |
T |
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| Q |
417 |
aattgagttttttgtcatggtt |
438 |
Q |
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| T |
28007595 |
agttgagttttttgtcatggtt |
28007616 |
T |
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