View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_high_19 (Length: 383)
Name: NF19975_high_19
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 6520368 - 6520708
Alignment:
| Q |
18 |
atgtgttttctttacaaggtaactttcttgttcctatttgttctttttcttatttcagacattgtgctttttctcttgtttaccctttttagctactatt |
117 |
Q |
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| T |
6520368 |
atgtgttttctttacaaggtaactttcttgttcctatttgttccttttcttatttcagacattgtgctttttatcttgtttaccctttttagctactatt |
6520467 |
T |
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| Q |
118 |
attagctcacacactaagtgttgttttgttgtaatgtttttagctttcaaacatgttaagggnnnnnnngtcaaaaaatatattctttgtaatttgtaaa |
217 |
Q |
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| T |
6520468 |
attagctcacacactaagtgttgttttgttgtaatgtttttagctttcaaacatgttaagggtttttttgtcaaaaaaaatattctttgtaatttgtaaa |
6520567 |
T |
|
| Q |
218 |
gtttgattttgtgtgttcattgatatgttatcatcaaattttggtgattttgactcttacttaactaatattagcttaatgacaagtcctttgagctcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6520568 |
gtttgattttgtgtgttcattgatatgttatcatcaaattttggtgcttttgactcttacttaactaatattagcttaatgacaagtcctttgagctcat |
6520667 |
T |
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| Q |
318 |
tttgcatgtttgtatatgaatttcttatttcaatttgaggg |
358 |
Q |
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| T |
6520668 |
tttgcatgtttgtatatgaatttgttatttcaatttgaggg |
6520708 |
T |
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