View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_high_2 (Length: 678)
Name: NF19975_high_2
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 126 - 664
Target Start/End: Original strand, 26652958 - 26653493
Alignment:
| Q |
126 |
tctaattaatatacaaacttttaacaacaaaaaattaccttacaatcaattaacacaaatccatgggaacggcgccatttgatgagcccgattgtagcaa |
225 |
Q |
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| T |
26652958 |
tctaattaatatacaaacttttatcaacaaa---ttaccttacaatcaattaacacaaatccatgggaacagcgccatttgatgagcccgattgtagcaa |
26653054 |
T |
|
| Q |
226 |
tgaagaatcaaagatttataattattagttggtagtgtttagctgattataggtgttcattgagaaattatgagtgaaggatgaaacaaacaatagacaa |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26653055 |
tgaagaatcaaagatttataattattagttggtagtgtttagctgattataggtgtttattgagaaattatgagtgaaggatgaaacaaacaatagacaa |
26653154 |
T |
|
| Q |
326 |
gttatgttggtaataggcttcattagttagctcatctttccttgatcaactttaaattccttttatctcaattatacattcatctatcacccttcatgga |
425 |
Q |
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| T |
26653155 |
gttatgttgggaatagacttcattagttagttcatctttccttgatcaactttaaattccttttattccaattataccttcacctatcacccttcatgga |
26653254 |
T |
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| Q |
426 |
tcttgatgtctcgtaaataatggtagatcgtctctaatctctaacctctgatgttacgattaattacctaaaagagaaacattaagttccaacaatatgt |
525 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| |||| ||||||||| ||||||| || |
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| T |
26653255 |
tcttgatatctcgtaaataatggtagatcgtctctagtctctaacctctgatgttacgattagttacttaaaaaagaagcattaagtttcaacaatgtgc |
26653354 |
T |
|
| Q |
526 |
gtgattgtaaacgtagcccgacaagtgcccttgcctgttttccttacaagggatgtatgattctagcatgccccaaatcaaaagatcaatcaagggattt |
625 |
Q |
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| T |
26653355 |
gtgattgtaaacctaatccgacaaatacccttgcctgttttccttataagggatgtctgattctagcatgccccaagtcaaaagatcaatcaagggattt |
26653454 |
T |
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| Q |
626 |
tgatatgttgcataagtcgacttgatctacaagcctttg |
664 |
Q |
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| T |
26653455 |
tgatatgttgcataagtcgacttgatctacaagcctttg |
26653493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 251 - 479
Target Start/End: Complemental strand, 31930881 - 31930647
Alignment:
| Q |
251 |
tagttggtagtgtttagctgattataggtgttcattgagaaattatgagtgaaggatgaaacaaacaatagacaagttatgttggtaataggcttcatta |
350 |
Q |
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| T |
31930881 |
tagttggtagtgtttagttgattgtaggtgtttattgacacattatgagtgaggggtgaaacaaacaatagaaaagttgtgttgggattaagcttcacta |
31930782 |
T |
|
| Q |
351 |
gttagctca------tctttccttgatcaactttaaattccttttatctcaattatacattcatctatcacccttcatggatcttgatgtctcgtaaata |
444 |
Q |
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|| || ||| ||||| | ||||| | | |||| |||| |||| |||||||||| |||| ||||||| | || ||||| |||||||| || ||| |
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| T |
31930781 |
gtcagttcaataatgtcttttcctgatcgattataaactcctcttatttcaattataccttcacttatcaccttaaatagatctcgatgtctcatagata |
31930682 |
T |
|
| Q |
445 |
atggtagatcgtctctaatctctaacctctgatgt |
479 |
Q |
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| T |
31930681 |
atgagagatcgtctctagtctctaacttatgatgt |
31930647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 479
Target Start/End: Complemental strand, 26744470 - 26744379
Alignment:
| Q |
388 |
ttatctcaattatacattcatctatcacccttcatggatcttgatgtctcgtaaataatggtagatcgtctctaatctctaacctctgatgt |
479 |
Q |
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||||| |||||||| |||| |||||||||||||| ||||| |||||||| ||||||||| |||| |||||| | |||||||| |||||| |
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| T |
26744470 |
ttatcccaattatatcttcacctatcacccttcatagatctcgatgtctcacaaataatgggagataatctctagtatctaacctttgatgt |
26744379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 27751041 - 27751095
Alignment:
| Q |
378 |
taaattccttttatctcaattatacattcatctatcacccttcatggatcttgat |
432 |
Q |
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| T |
27751041 |
taaactcctcttatttcaattatacattcacctatcgcccttcatagatcttgat |
27751095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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