View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_high_26 (Length: 309)
Name: NF19975_high_26
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_high_26 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 39876669 - 39876966
Alignment:
| Q |
12 |
ctatatataaatctatcacatgtaagtacaaataccaagctacgtaacagnnnnnnntggttaacctgtatatggcgataaagattgggaatcaactggt |
111 |
Q |
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| T |
39876669 |
ctatatataaatctatcaaatgtaagtacaaataccaagctacgtaacagaaaaaaatggttaacctgtatatagcgataaagattgggaatcaactggt |
39876768 |
T |
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| Q |
112 |
cctcctcatgactcatcccacttctaaagtgggttacagcgacatctgtctgctgactataccgtagatcacaatgtggaatcaaaatgtgacccataga |
211 |
Q |
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| T |
39876769 |
cctcctcatgactcatcccacttctaaagtgggttacagcgacatctgtctgctgactataccgtagatcactatgtggaatcaaaatgtgacccataga |
39876868 |
T |
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| Q |
212 |
caacattccaagtcctccaatttcctttggggtgtagaaaatgacaggcggaaacctggtaaaagagacagaaacacagatttgatcaacgggactaa |
309 |
Q |
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| T |
39876869 |
caacattccaagtcctccaatttcctttggggtgtagaaaatgacaggcggaaacctggtaaaagagacagaaacacagatttgatcaacgggactaa |
39876966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 44779906 - 44780188
Alignment:
| Q |
16 |
atataaatctatcacatgtaagtacaaataccaagctacgtaac--agnnnnnnntggttaacctgtatatggcgataaagattgggaatcaactggtcc |
113 |
Q |
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| T |
44779906 |
atataaatctatcaaatgtaagtacgaataccaagttatgtaactgagaaagaaatggttaacctgtatatagcgataaagattgggaatcaactggtcc |
44780005 |
T |
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| Q |
114 |
tcctcatgactcatcccacttctaaagtgggttacagcgacatctgtctgctgactataccgtagatcacaatgtggaatcaaaatgtgacccatagaca |
213 |
Q |
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| T |
44780006 |
tcctcgtgactcataccacttctaaagtgggttacaccaacatctgtctgctgactgtaccgtagatcactttgtggaatcaaaatgtgacccatagaca |
44780105 |
T |
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| Q |
214 |
acattccaagtcctccaatttcctttggggtgtagaaaatgacaggcggaaacctggtaaaagagacagaaacacagatttga |
296 |
Q |
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| T |
44780106 |
acattccaagtcctccaatttcctttggggtgtagaaaatgacaggtggaaacctggtaaaagagacagaaacacagatttga |
44780188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 97 - 265
Target Start/End: Complemental strand, 2899055 - 2898887
Alignment:
| Q |
97 |
tgggaatcaactggtcctcctcatgactcatcccacttctaaagtgggttacagcgacatctgtctgctgactataccgtagatcacaatgtggaatcaa |
196 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||||| |||| | | |||| ||||| ||||||||||| |
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| T |
2899055 |
tgggaatcaactgaccctcctcatgactcatcccacttctgaagtgggttacaccaacatctgtcttctgattgtgacgtatatcactttgtggaatcaa |
2898956 |
T |
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| Q |
197 |
aatgtgacccatagacaacattccaagtcctccaatttcctttggggtgtagaaaatgacaggcggaaa |
265 |
Q |
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| T |
2898955 |
aatgtgacccatagacaacatcccaagtcctccaacttccttgggcgagtagaaaatgacaggcggaaa |
2898887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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