View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_high_31 (Length: 250)
Name: NF19975_high_31
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 56300804 - 56300754
Alignment:
| Q |
1 |
taagaaaaatattagaaattgctcaaaaattataattacttatatctataa |
51 |
Q |
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| T |
56300804 |
taagaaaaatattggaaattgctcaaaaattataattacttatatctataa |
56300754 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 56300750 - 56300699
Alignment:
| Q |
103 |
tttaaggacactataattaaatttttccgcgagtcgttattttaaatttgtt |
154 |
Q |
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| T |
56300750 |
tttaaggacacaataattaaatttttccgtgagtcgttattttaaatttgtt |
56300699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 56300693 - 56300653
Alignment:
| Q |
199 |
ctatgtacgtgataaaacagtcatttaacttcatctttcat |
239 |
Q |
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| T |
56300693 |
ctatgtatgtgataaaacagtcatttaacttcatctttcat |
56300653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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