View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_high_8 (Length: 522)
Name: NF19975_high_8
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 17351034 - 17351528
Alignment:
| Q |
19 |
atcaatatctgcccaatgatgtgcattttctcaacctgttgaatggttgaacaatatgagatctttagttgttatgcaggaatagtggtatatgtactcg |
118 |
Q |
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| T |
17351034 |
atcaatatctgcccaatgatgtgcattttctcaacctgttgaatggtcgaacaatatgagatccttagttgttatgcaagaatagtggtatatgtactcg |
17351133 |
T |
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| Q |
119 |
tgtctataggcacaatacattaacatagtaaaaaa-tgatcatttcacctctaccacccttctgcttcccacatgatgagaacataaattactgttttag |
217 |
Q |
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||||||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17351134 |
tgtctataggcacaatacactagcatagtaaaaaaatgatcctttcacctctaccacccttctgcttcccacaggatgagaacataaattactgttttag |
17351233 |
T |
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| Q |
218 |
ttgttagagaatgatcttatatgaaacaaa-ggatccataatatgaagatacaaaaaccaaaacttttttctattagatgggataaatcacatggatcaa |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17351234 |
ttgttagagaatgatcttatatgaaacaaatggatccataatatgaagatacaaaaaccaaaacttttttctattagatgagataaatcacatggatcaa |
17351333 |
T |
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| Q |
317 |
acaatgatatattgtcctatcataaattatatacaatgacataccatgtacatctaccatgtgtgctcaccctgattttgagttgttaaaatactatact |
416 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17351334 |
acgatgatatattgtcctatcataaattatatgcaatgacataccatttacatctaccatgtgtgctcaccctgattttgagttgttaaaatactatact |
17351433 |
T |
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| Q |
417 |
cttgttcgattagtcgaatctagcaacacaaatttctctcttcttgatccttccacaatatacctctatggacaccccatgacacactttttcat |
511 |
Q |
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| T |
17351434 |
cgtcttcgattagtcgaatctagtaacacaaatttctctcttcttgatccttccacaatatacctctatggacaccctatgacacactttttcat |
17351528 |
T |
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