View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_low_10 (Length: 509)
Name: NF19975_low_10
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_low_10 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 28764820 - 28764331
Alignment:
| Q |
1 |
taatcctccatgatgacctgttcactcaggtcttattattgcttcctgttaaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctcat |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28764820 |
taatcctccatgatgacctgttcacccaggtcttattattgcttcctgttaaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctcat |
28764721 |
T |
|
| Q |
101 |
ctccagtcccaccttcgttgaattacaccttcagcaatcacaacga---aaaaggcaactattactaacatatctaacatatgtactctcatatgatgat |
197 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
28764720 |
ctccggtcccaccttcgttgaattacaccttcagcaatcacaacgacgaaaaaggcaactactactaacatat---------gtactctcatacgatgat |
28764630 |
T |
|
| Q |
198 |
aatcgttgtttcgtacccttatccatatgtcgtttactgagtaacacatcaatcacccttgactgccgtagattgatgtacac-----cgattgtagcga |
292 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28764629 |
aatcgttggttcgtacccttatccatatgtcgtttactgagtaacacatcaatcacccttgactgccgtagattgatgtacactgattggattgtagcga |
28764530 |
T |
|
| Q |
293 |
agtagttggttcctgcaatggattgatatgtttgcttggaaagtccgcaaataaacatcaagccatctggtttcgtgtttggaacccagccacagggaat |
392 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
28764529 |
agtagttggttcctgtaatggattgatatgtttgcttggacggtccgcaaataagcatcgagccatctggttccgtgtttggaacccagccacagggaat |
28764430 |
T |
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| Q |
393 |
atatctgaaaaattaggatctttaaacaaacctcgcaagcgtggatctagcatgctcagatacacatttggttatgacaattcaactggaagttataag |
491 |
Q |
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| T |
28764429 |
atatctgaaaaattaggatctttaaacaaacctcgcaagcgtggatctagcatgctcagatacacatttggttatgacatttcaactggaagttataag |
28764331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 5437741 - 5437679
Alignment:
| Q |
42 |
cttcctgttaaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctcatctcc |
104 |
Q |
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| T |
5437741 |
cttcctgttaaatatcttatgcaaatgaagtgtgtttgcaagtcatggaacaccctcatctcc |
5437679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 18914152 - 18914114
Alignment:
| Q |
295 |
tagttggttcctgcaatggattgatatgtttgcttggaa |
333 |
Q |
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| T |
18914152 |
tagttggttcctgcaatggattgatttgtttgcgtggaa |
18914114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 553743 - 553804
Alignment:
| Q |
42 |
cttcctgttaaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctcatctc |
103 |
Q |
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| T |
553743 |
cttcctgttgaatatcttatgcgaatgaagtgtgtttgcaaatcatggaacaccctcatctc |
553804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 491
Target Start/End: Complemental strand, 19326533 - 19326402
Alignment:
| Q |
360 |
tggtttcgtgtttggaacccagccacagggaatatatctgaaaaattaggatctttaaacaaacctcgcaagcgtggatctagcatgctcagatacacat |
459 |
Q |
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| T |
19326533 |
tggtttcgtatctggaatccggccactggggtaatatctgaaaaattaagatcttttaacaaaactcgcattggtgtatattgcaggctcaggttcacat |
19326434 |
T |
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| Q |
460 |
ttggttatgacaattcaactggaagttataag |
491 |
Q |
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|||| ||||| ||||||||||||| ||||||| |
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| T |
19326433 |
ttgggtatgataattcaactggaacttataag |
19326402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 18325428 - 18325484
Alignment:
| Q |
42 |
cttcctgttaaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctc |
98 |
Q |
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| T |
18325428 |
cttcctgtgaaatctcttatgcaactaaagtgctgttgtaaatcatggaacaccctc |
18325484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 326
Target Start/End: Original strand, 3625189 - 3625220
Alignment:
| Q |
295 |
tagttggttcctgcaatggattgatatgtttg |
326 |
Q |
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| T |
3625189 |
tagttggttcctgcaatggattgatatgtttg |
3625220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 161095 - 161148
Alignment:
| Q |
51 |
aaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctcatctcc |
104 |
Q |
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| T |
161095 |
aaatctcttatgcagatgaagtgtgtttgcaagtcttggaaaaccctaatctcc |
161148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 326
Target Start/End: Complemental strand, 3561608 - 3561579
Alignment:
| Q |
297 |
gttggttcctgcaatggattgatatgtttg |
326 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3561608 |
gttggttcctgcaatggattgatatgtttg |
3561579 |
T |
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