View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19975_low_12 (Length: 473)
Name: NF19975_low_12
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Complemental strand, 49774485 - 49774036
Alignment:
| Q |
8 |
ggagaagcaaaggcggagatgatagggtttcgaacgaaagacacggcggcgtttcggttagcttgtaactgagcacgtttgagttgttgacgttcttttt |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49774485 |
ggaggagcaaaggcggagatgatagggtttcgaacgaaagacacggcggcgtttcggttagcttgtaactgagcacgtttgagttgttgacgttcttttt |
49774386 |
T |
|
| Q |
108 |
tgtgagcgttttggtgtccgccaagggcttgtgaatttgcaaactctctgcaacaatattggcactcgtattttctttcaccggaggaaggtgggaaagt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49774385 |
tgtgagcgttttggtgtccgccaagggcttgtgaatttgcaaactctctgcaacaatattggcactcgtattttctttcaccggaggaaggtgggaaagt |
49774286 |
T |
|
| Q |
208 |
ttcgttgataccagaggagtccggtgatcttgatggtgaagttgaggtggaagaagaagttgttttggttgtt------gttgagtcttgaatatcatgc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49774285 |
ttcgttgataccagaggagtccggtgatcttgatggtgaagttgaggtggaagaagaagttgttttggttgttgttgttgttgagtcttgaatatcatgc |
49774186 |
T |
|
| Q |
302 |
atggtttcatcttcatggaagctgaaaccaaagagcttaaggtgtgtttgggaagttgggtttgttgttttagtattgtaatgatcatggtggttgttat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49774185 |
atggtttcatcttcatggaagctgaaaccaaagagcttaaggtgtgtttgggaagttgggtttgttgttttagtattgtaatgatcatggtggttgttat |
49774086 |
T |
|
| Q |
402 |
ccatggaagttgtttgaatttgaatagagttgaagggtttgtgagttgtg |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49774085 |
ccatggaagttgtttgaatttgaatagagttgaagggtttgtgagttgtg |
49774036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 22863157 - 22863338
Alignment:
| Q |
13 |
agcaaaggcggagatgatagggtttcgaacgaaagacacggcggcgtttcggttagcttgtaactgagcacgtttgagttgttgacgttcttttttgtga |
112 |
Q |
| |
|
||||||||||||||| || ||||||||||| || || ||||| ||||||| |||||||||||| || |||||||||||||| || ||||||||||| |
|
|
| T |
22863157 |
agcaaaggcggagataatcgggtttcgaacaaacgaaacggcagcgtttcttgaagcttgtaactgtgctcgtttgagttgttggcgctcttttttgtgt |
22863256 |
T |
|
| Q |
113 |
gcgttttggtgtccgccaagggcttgtgaatttgcaaactctctgcaacaatattggcactcgtattttctttcaccggagg |
194 |
Q |
| |
|
|||||||||||||| || |||||||| || |||||||| |||| ||||||||||| ||||||||||| | |||||||||| |
|
|
| T |
22863257 |
gcgttttggtgtccacctagggcttgcgagtttgcaaattctcgacaacaatattgacactcgtatttccggtcaccggagg |
22863338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 31519970 - 31520047
Alignment:
| Q |
101 |
tcttttttgtgagcgttttggtgtccgccaagggcttgtgaatttgcaaactctctgcaacaatattggcactcgtat |
178 |
Q |
| |
|
||||| ||||| || ||||||||||| || | |||||||||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
31519970 |
tctttcttgtgtgcattttggtgtcctcctaaggcttgtgaatttgcaaattctctacaacaatattgacactcgtat |
31520047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University