View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_low_13 (Length: 469)
Name: NF19975_low_13
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 12 - 451
Target Start/End: Complemental strand, 11903525 - 11903086
Alignment:
| Q |
12 |
cagagacagttaatagtaacatgaagaatgtcaaaagaaattttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaact |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903525 |
cagaaacagttaatagtaacatgaagaatgtcaaaagaaattttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaact |
11903426 |
T |
|
| Q |
112 |
actgaagttgaacaaccctgctgatgatttcgttcctgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaa |
211 |
Q |
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| T |
11903425 |
actgaagttgaacaaccctgctgatgatttcgttcctgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaa |
11903326 |
T |
|
| Q |
212 |
gatgaacaagtcaaagctcattttggtttcgaaccaatttggatccgttctctccatgaaacctttgatgtggaatacattgctaacttagctatgacca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903325 |
gatgaacaagtcaaagctcattttggtttcgaaccaatttggatccgttctctccatgaaacctttgatgtggaatacattgctaacttagctatgacca |
11903226 |
T |
|
| Q |
312 |
cagtcattgatggaagtgtacgccgcctacttgtgctcgatgatttgcgaattgagattaagcatgatcttgaaaagttgcaaaagaaattaactgaatc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903225 |
cagtcattgatggaagtgtacgccgcctacttgtgctcgatgatttgcgaattgagattaagcatgatcttgaaaagttgcaaaagaaattaactgaatc |
11903126 |
T |
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| Q |
412 |
tggcggtaccagttgggcaatactcatcactacacgtagc |
451 |
Q |
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| T |
11903125 |
tggcggtaccagttgggcaatactcatcactacacgtagc |
11903086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 80 - 451
Target Start/End: Original strand, 11730745 - 11731116
Alignment:
| Q |
80 |
gaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttc---gttcctgttattgtcattgttggtgttcctggaa |
176 |
Q |
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| T |
11730745 |
gaaaaagagaagaaagagcttgtagatcaactacttaacttgaacaattctactgatgattttcatgttggtgtttttgtcattgttggtgttccgggaa |
11730844 |
T |
|
| Q |
177 |
ttgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatccgttctctccatgaaacctt |
276 |
Q |
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| T |
11730845 |
tagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaagcaaattttgggctacaaccaatttggatcgatcttctacacgagacctt |
11730944 |
T |
|
| Q |
277 |
tgatgtggaatacattgctaacttagctatgaccacagtcattgatggaagtgtacgccgcctacttgtgctcgatgatttgcgaattgagattaagcat |
376 |
Q |
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| T |
11730945 |
tgatgtggaatccatagttaagtcagctaccaccactg---ttgatgatggtaaacactgcctaatcgtgcttgatgatttgagaaatgagattaagaat |
11731041 |
T |
|
| Q |
377 |
gatcttgaaaagttgcaaaagaaattaactgaatctggcggtaccagttgggcaatactcatcactacacgtagc |
451 |
Q |
| |
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| T |
11731042 |
gatctcgagaagttgcagcaacgattaaaggagtcttgtggtaccggttgtgcaatactcatcactacacgtagc |
11731116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 11730274 - 11730461
Alignment:
| Q |
53 |
tttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttc---gttcctg |
149 |
Q |
| |
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||||||||| |||| ||||||| |||||| |||| ||||| ||||||||||||| |||||| |||| || ||| || |||||| ||| ||| || |
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| T |
11730274 |
tttgagaaagttactgtggttggaagagaatatgagaagaaagagattatagatcgactacttaagtggatcaaatctactgatgcttttcatgttggtg |
11730373 |
T |
|
| Q |
150 |
ttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttgg |
237 |
Q |
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|| ||||||||||||||||| | ||||| || || |||||||||||| ||||||||||| | ||||| ||||||||||| ||||||| |
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| T |
11730374 |
tttttgtcattgttggtgtttcaggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaagcaaattttgg |
11730461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 11859136 - 11859234
Alignment:
| Q |
158 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
256 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| |||||||||| || ||||||| || ||||||||||| |
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| T |
11859136 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatc |
11859234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 12037924 - 12038032
Alignment:
| Q |
148 |
tgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaacca |
247 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||| || ||||| |||||| || ||||||| || ||||| |
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| T |
12037924 |
tgttattgttattgttggtgttcctggaattggcaaaacaaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaacca |
12038023 |
T |
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| Q |
248 |
atttggatc |
256 |
Q |
| |
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||||||||| |
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| T |
12038024 |
atttggatc |
12038032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 11826968 - 11827061
Alignment:
| Q |
158 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaattt |
251 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||| ||||| || || || ||||||||||| |||||| ||||||| ||||| |
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| T |
11826968 |
attgttggtgttactggaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaagcgaattttgaattcgaacaaattt |
11827061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 11859049 - 11859104
Alignment:
| Q |
71 |
gttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaa |
126 |
Q |
| |
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||||||||||||| || |||||||||||||||||| |||| |||||| ||||||| |
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|
| T |
11859049 |
gttggcagagaaagagagaagaaggagattatagataaactgctgaagatgaacaa |
11859104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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