View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19975_low_14 (Length: 455)

Name: NF19975_low_14
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19975_low_14
NF19975_low_14
[»] chr8 (16 HSPs)
chr8 (14-438)||(44912825-44913250)
chr8 (14-304)||(43811253-43811544)
chr8 (14-304)||(201454-201745)
chr8 (14-304)||(316291-316582)
chr8 (14-304)||(30409573-30409864)
chr8 (166-298)||(10683365-10683497)
chr8 (333-432)||(197917-198017)
chr8 (333-432)||(312754-312854)
chr8 (15-122)||(41945913-41946020)
chr8 (15-124)||(1287424-1287533)
chr8 (333-432)||(30406036-30406136)
chr8 (37-124)||(28647030-28647117)
chr8 (165-304)||(28647159-28647298)
chr8 (333-432)||(43807716-43807816)
chr8 (165-304)||(1287575-1287714)
chr8 (388-432)||(41949682-41949726)
[»] chr3 (8 HSPs)
chr3 (165-322)||(22931059-22931216)
chr3 (14-304)||(54171114-54171405)
chr3 (15-304)||(21847725-21848015)
chr3 (15-304)||(9698178-9698468)
chr3 (333-432)||(54167577-54167677)
chr3 (333-432)||(21850023-21850123)
chr3 (165-304)||(43548463-43548602)
chr3 (37-122)||(43548334-43548419)
[»] chr4 (12 HSPs)
chr4 (15-294)||(20290099-20290379)
chr4 (14-304)||(44147654-44147945)
chr4 (15-304)||(27186736-27187026)
chr4 (15-124)||(43683130-43683239)
chr4 (19-124)||(31355280-31355385)
chr4 (339-432)||(8892854-8892948)
chr4 (333-432)||(50628163-50628263)
chr4 (165-304)||(43682949-43683088)
chr4 (24-129)||(53977457-53977562)
chr4 (333-432)||(44151382-44151482)
chr4 (165-304)||(31355427-31355566)
chr4 (338-432)||(31358981-31359076)
[»] chr5 (17 HSPs)
chr5 (14-304)||(37659323-37659614)
chr5 (14-304)||(12019385-12019676)
chr5 (14-304)||(7103144-7103435)
chr5 (14-304)||(16794765-16795056)
chr5 (48-266)||(30047949-30048167)
chr5 (166-300)||(16598148-16598282)
chr5 (15-304)||(30695893-30696183)
chr5 (27-304)||(40371017-40371295)
chr5 (333-432)||(12023113-12023213)
chr5 (15-304)||(10275134-10275424)
chr5 (333-432)||(37681860-37681960)
chr5 (333-432)||(7099607-7099707)
chr5 (333-432)||(16798493-16798593)
chr5 (333-432)||(10277028-10277128)
chr5 (333-432)||(40367833-40367933)
chr5 (27-154)||(15066729-15066856)
chr5 (333-378)||(30067058-30067103)
[»] chr2 (8 HSPs)
chr2 (14-304)||(8051488-8051779)
chr2 (14-304)||(36671147-36671438)
chr2 (167-331)||(17256030-17256194)
chr2 (333-432)||(8055216-8055316)
chr2 (15-304)||(13270298-13270588)
chr2 (333-432)||(36674875-36674975)
chr2 (225-304)||(35953862-35953941)
chr2 (333-432)||(35950671-35950771)
[»] scaffold0044 (2 HSPs)
scaffold0044 (14-304)||(48635-48926)
scaffold0044 (333-432)||(45098-45198)
[»] chr7 (7 HSPs)
chr7 (165-315)||(730356-730506)
chr7 (14-304)||(7943853-7944144)
chr7 (15-300)||(27757494-27757780)
chr7 (336-432)||(27761224-27761321)
chr7 (333-432)||(7940316-7940416)
chr7 (338-429)||(13828340-13828432)
chr7 (98-127)||(729995-730024)
[»] chr6 (10 HSPs)
chr6 (15-304)||(8319274-8319564)
chr6 (15-122)||(21416559-21416666)
chr6 (27-304)||(27571502-27571780)
chr6 (98-304)||(23254233-23254439)
chr6 (333-432)||(8315737-8315837)
chr6 (333-432)||(27552343-27552443)
chr6 (15-115)||(14531265-14531365)
chr6 (15-304)||(17881249-17881539)
chr6 (333-411)||(3596396-3596475)
chr6 (344-432)||(17887078-17887167)
[»] chr1 (5 HSPs)
chr1 (15-304)||(39794492-39794782)
chr1 (15-304)||(26312110-26312400)
chr1 (333-432)||(26315837-26315937)
chr1 (333-401)||(30647189-30647258)
chr1 (332-432)||(43592054-43592155)
[»] scaffold0440 (2 HSPs)
scaffold0440 (333-432)||(7330-7430)
scaffold0440 (333-432)||(2804-2904)
[»] scaffold0027 (1 HSPs)
scaffold0027 (165-267)||(54223-54325)
[»] scaffold0009 (1 HSPs)
scaffold0009 (165-304)||(64547-64686)


Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Complemental strand, 44913250 - 44912825
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44913250 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 44913151  T
Q  114 atctcaaaatccacaaagtctaaggaggctttggatattct-gaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44913150 atctcaaaatccacaaagtctaaggaggctttggatattcttgaaagatgttatgaaggtgatgctaaggtgaaagagataaagcttcagtctttaagaa 44913051  T
Q  213 gaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgtggggaaac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44913050 gaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgtggggaaac 44912951  T
Q  313 aatttatgatcatcaaattaaagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatttccattgttctactgagctgcaacttc 412  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44912950 aatttatgatcatcaaattgaagtaaagtttcattttcttagggaataagtaaacaaaggggctctaaagatttccattgttctactgagctgcaacttc 44912851  T
Q  413 ctgacatattcactaaggcagttaag 438  Q
    ||||||||||||||||||||||||||    
T  44912850 ctgacatattcactaaggcagttaag 44912825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 43811544 - 43811253
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||  | |||  |||||| |||||||||    
T  43811544 tactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagccttgatgaaggaaactttgaaaga 43811445  T
Q  114 atctcaaaatccacaaagt-ctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    ||||||||||| ||  ||| | ||||| || | ||| |||||   |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  43811444 atctcaaaatc-actgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 43811347  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||| ||||||||||||||||||| || ||||||  ||| |||||||| ||||| | |||| |||| ||||||||||||||||||    
T  43811346 aaggaaatttgaattgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcattaatcttgtgaatcagatgaaggcttgt 43811253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 201745 - 201454
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  201745 tactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 201646  T
Q  114 atctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    |||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  201645 atctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 201548  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  201547 aaggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 201454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 316582 - 316291
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  316582 tactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 316483  T
Q  114 atctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    |||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  316482 atctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 316385  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  316384 aaggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 316291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 30409864 - 30409573
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  30409864 tactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 30409765  T
Q  114 atctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    |||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  30409764 atctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 30409667  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  30409666 aaggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 30409573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 166 - 298
Target Start/End: Complemental strand, 10683497 - 10683365
Alignment:
Q  166 tgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatc 265  Q
    |||||||||||  ||||||||| |||| |||||||||||| ||||||| || ||| || ||||||| |||||||||||  |||| ||||||||||||||     
T  10683497 tgaaggtgatgaaaaggtgaagcagatcaagcttcagtctctaagaaggaaatttaaactgatgcagatggaagatgataaaaaaattgttgattacata 10683398  T
Q  266 tccaaactgaataatgttgtaaatcagatgaag 298  Q
    |||||||||| |||| || | ||||||||||||    
T  10683397 tccaaactgattaatattttcaatcagatgaag 10683365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 198017 - 197917
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  198017 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 197918  T
Q  432 a 432  Q
    |    
T  197917 a 197917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 312854 - 312754
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  312854 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 312755  T
Q  432 a 432  Q
    |    
T  312754 a 312754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 41945913 - 41946020
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||| ||||| ||||| ||| |||| ||||| |||||||| || |||||||| |||||||| |||||||||||| | |||  |||||| ||||||||||    
T  41945913 actgatgtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctcttttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 41946012  T
Q  115 tctcaaaa 122  Q
    ||||||||    
T  41946013 tctcaaaa 41946020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 1287424 - 1287533
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||||||||| ||||| ||| |||| |||| ||||||||| || ||||||||  | ||||| |||||||||||| | |||  |||||| ||||||||||    
T  1287424 actgaggtgcaaaggaacgcacacaaggaatataagaagaaagattgcaaggctttgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 1287523  T
Q  115 tctcaaaatc 124  Q
    ||||||||||    
T  1287524 tctcaaaatc 1287533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 30406136 - 30406036
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||||||||| |||||||| ||||||||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  30406136 aagcaaagttccattttctaagggaacaagtgaacaagggagcactgcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 30406037  T
Q  432 a 432  Q
    |    
T  30406036 a 30406036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 28647030 - 28647117
Alignment:
Q  37 acaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatc 124  Q
    |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||||||||||||    
T  28647030 acaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaaatc 28647117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 304
Target Start/End: Original strand, 28647159 - 28647298
Alignment:
Q  165 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacat 264  Q
    |||||||||||| ||| |||||   ||| |||||||| |   ||||||| || |||||| ||||||||||||||||||| || ||||||  ||| |||||    
T  28647159 atgaaggtgatgataaagtgaaattgattaagcttcaataactaagaaggaaatttgaactgatgcaaatggaagatgatcagaagatttctgaatacat 28647258  T
Q  265 ctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| ||||  |  ||| |||| ||||||||||||||||||    
T  28647259 ctctaaacacatcaatcttgtgaatcagatgaaggcttgt 28647298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 43807816 - 43807716
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  43807816 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 43807717  T
Q  432 a 432  Q
    |    
T  43807716 a 43807716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 304
Target Start/End: Original strand, 1287575 - 1287714
Alignment:
Q  165 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacat 264  Q
    |||||||||||| |||||||||   ||| |||||||| ||  | ||||  || |||||  ||||| | ||||||||||| || ||||||  ||| |||||    
T  1287575 atgaaggtgatgataaggtgaaatcgattaagcttcaatcactgagaaagaaatttgagctgatgtagatggaagatgatcagaagatttctgaatacat 1287674  T
Q  265 ctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| ||||| |  ||| |||| ||||||||||||||||||    
T  1287675 ctctaaactcatcaatcttgtgaatcagatgaaggcttgt 1287714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 41949682 - 41949726
Alignment:
Q  388 cattgttctactgagctgcaacttcctgacatattcactaaggca 432  Q
    ||||| |||||||||||||| ||| | ||||||||||||||||||    
T  41949682 cattgctctactgagctgcagcttgcagacatattcactaaggca 41949726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 165 - 322
Target Start/End: Complemental strand, 22931216 - 22931059
Alignment:
Q  165 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacat 264  Q
    ||||||| ||||||||||||||| |||||||||||||||  |||||||| || |||||  |||||||||||||||||||| |||||||||||||||||||    
T  22931216 atgaaggagatgctaaggtgaagcagataaagcttcagttattaagaaggaaatttgagttgatgcaaatggaagatgagaaaaagattgttgattacat 22931117  T
Q  265 ctccaaactgaataatgttgtaaatcagatgaaggcttgtggggaaacaatttatgat 322  Q
    |||||  |||| ||||||||||||||||||||||| |||| | | |||||||| ||||    
T  22931116 ctccatgctgattaatgttgtaaatcagatgaaggtttgtagtggaacaatttctgat 22931059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 54171405 - 54171114
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| | || ||||| ||||| || || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  54171405 tactgaggtgcaaaggaacgcacataaggaattgaagaaaaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 54171306  T
Q  114 atctcaaaatccacaaagt-ctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    ||||||||||| ||  ||| | ||||| || | ||| |||||   |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  54171305 atctcaaaatc-actgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 54171208  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||  ||||||||||||||||||| |||||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  54171207 aaggaaatttgagctgatgcaaatggaagatgatcaaaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 54171114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 21847725 - 21848015
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||| ||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  21847725 actgaagtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 21847824  T
Q  115 tctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaaga 211  Q
    ||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | |||    
T  21847825 tctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgaga 21847922  T
Q  212 agaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    || || |||||  ||||||||||||||||||| || ||||||  | | |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  21847923 aggaaatttgagctgatgcaaatggaagatgatcagaagatttctaagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 21848015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 9698178 - 9698468
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  9698178 actgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 9698277  T
Q  115 tctcaaaatccacaaagtctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaa 212  Q
    |||||||| |    |  || ||||| || | ||| ||||  | |||| | | ||||||||| || ||| ||||||  ||| |||||||| ||  | ||||    
T  9698278 tctcaaaaacagttagatcaaaggaagcatgggacattctttcaaag-tatcatgaaggtggtgataaagtgaagttgattaagcttcaatcactgagaa 9698376  T
Q  213 gaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    | || |||||  || |||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  9698377 ggaaatttgagctggtgcaaatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 9698468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 54167677 - 54167577
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  54167677 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 54167578  T
Q  432 a 432  Q
    |    
T  54167577 a 54167577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 21850023 - 21850123
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| |||||||||||||| ||| | |||||||||||||||||    
T  21850023 aagcaaagtttcattttctaagggagcaagtgaacaagggagcactgcagattgttcattgctctactgagctgcagcttgcagacatattcactaaggc 21850122  T
Q  432 a 432  Q
    |    
T  21850123 a 21850123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 304
Target Start/End: Original strand, 43548463 - 43548602
Alignment:
Q  165 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacat 264  Q
    |||||||||||| ||| |||||   ||| |||||||| ||  ||||||| || |||||  ||||||| ||||||||||| |||||||||  ||| |||||    
T  43548463 atgaaggtgatgataaagtgaaattgattaagcttcaatcactaagaaggaaatttgagctgatgcagatggaagatgatcaaaagatttctgaatacat 43548562  T
Q  265 ctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
     || ||||| |  ||| |||| ||||||||||||||||||    
T  43548563 atctaaactcatcaatcttgtgaatcagatgaaggcttgt 43548602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 43548334 - 43548419
Alignment:
Q  37 acaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaa 122  Q
    |||| ||||| |||||||| || ||||||||  | ||||| |||||||||||| | |||  |||||| ||||||||||||||||||    
T  43548334 acaaggaattgaagaagaaagattgcaaggctgtgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaaa 43548419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 20290099 - 20290379
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||| ||||| ||||||||| | ||||| || ||||||||||| ||||||| | | ||| |||||||| | ||| | |||  |||||| ||| ||||||    
T  20290099 actgaagtgcataggaatgcacataaagagttaaagaagaaggattgcaaggaattgttcctcattcaatagagtcttgatgaaggaaactttaaaagaa 20290198  T
Q  115 tctcaaaatccacaaagtctaaggaggctttggatattctg-aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaag 213  Q
    | || ||||||||||  || ||||| ||||   |||||||| ||| || | |||||||||||| ||||||| || |||||||||||||||| || |||||    
T  20290199 tttctaaatccacaagatcaaaggaagcttcaaatattctggaaaaatatcatgaaggtgatgataaggtggagcagataaagcttcagtcattgagaag 20290298  T
Q  214 aaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagat 294  Q
     |||||| || ||||||||||||| |||||| | ||||||| |||||||||||||||||| |  |||||||||||||||||    
T  20290299 gaagtttaaattgatgcaaatggaggatgagaagaagattgctgattacatctccaaactaatcaatgttgtaaatcagat 20290379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 44147654 - 44147945
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  44147654 tactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 44147753  T
Q  114 atctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    |||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  44147754 atctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 44147851  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  44147852 aaggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 44147945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 27186736 - 27187026
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  27186736 actgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 27186835  T
Q  115 tctcaaaatccacaaagtctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaa 212  Q
    |||||||| |    |  || ||||| || | ||| ||||  | |||| | | ||||||||| || ||| ||||||  ||| |||||||| ||  | ||||    
T  27186836 tctcaaaaacagttagatcaaaggaagcatgggacattctttcaaag-tatcatgaaggtggtgataaagtgaagttgattaagcttcaatcactgagaa 27186934  T
Q  213 gaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    | || |||||  || |||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  27186935 ggaaatttgagctggtgcaaatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 27187026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 43683239 - 43683130
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||||||||| |||||  || |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  43683239 actgaggtgcaaaggaacacacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 43683140  T
Q  115 tctcaaaatc 124  Q
    ||||||||||    
T  43683139 tctcaaaatc 43683130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 31355280 - 31355385
Alignment:
Q  19 aggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctc 118  Q
    ||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||| |||||||||    
T  31355280 aggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttggaagaatctc 31355379  T
Q  119 aaaatc 124  Q
    ||||||    
T  31355380 aaaatc 31355385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 432
Target Start/End: Complemental strand, 8892948 - 8892854
Alignment:
Q  339 agtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggca 432  Q
    |||| |||||||| ||||| ||||| ||||| || || ||| ||||| | ||||| |||||||||||||||||| | ||||||||||||||||||    
T  8892948 agttccattttctgagggagcaagtgaacaagggagcactacagattgttcattgctctactgagctgcaacttgcagacatattcactaaggca 8892854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 50628263 - 50628163
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| |||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| |||||||||||||| ||| | |||||||||||||||||    
T  50628263 aagccaagtttcattttctgagggagcaagtgaacaagggagcactgtagattgttcattgctctactgagctgcagcttgcagacatattcactaaggc 50628164  T
Q  432 a 432  Q
    |    
T  50628163 a 50628163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 304
Target Start/End: Complemental strand, 43683088 - 43682949
Alignment:
Q  165 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacat 264  Q
    |||||||||||| ||| ||||||  ||| || ||||| ||  | ||||| || |||||| |||| |||||||||||||| || ||||||  ||| |||||    
T  43683088 atgaaggtgatgataaagtgaagttgattaaacttcaatcactgagaaggaaatttgaactgatacaaatggaagatgatcagaagatttctgaatacat 43682989  T
Q  265 ctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || || |  ||| |||| ||||||||||||||||||    
T  43682988 ctctaacctcatcaatcttgtgaatcagatgaaggcttgt 43682949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 53977457 - 53977562
Alignment:
Q  24 cagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaat 123  Q
    |||| ||||||| ||||||| || ||||||||||| ||||||||  | ||  | |||||||||||| | |||  ||| || ||||||||||||||||||     
T  53977457 cagaagaatgcacacaaagatttaaagaagaaggattgcaaggctttatttctgattcaacaaagtcttgatgaaggtaactttgaaagaatctcaaaac 53977556  T
Q  124 ccacaa 129  Q
    ||||||    
T  53977557 ccacaa 53977562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 44151382 - 44151482
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||| ||||||| ||| | |||||||||||||||||    
T  44151382 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactaagctgcagcttgcagacatattcactaaggc 44151481  T
Q  432 a 432  Q
    |    
T  44151482 a 44151482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 304
Target Start/End: Original strand, 31355427 - 31355566
Alignment:
Q  165 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacat 264  Q
    |||||||||||| ||| ||||||  ||| || ||||||||  | ||||| || |||||  ||||||| |||||||||||  | ||||||  ||| |||||    
T  31355427 atgaaggtgatgataaagtgaagatgattaaacttcagtcactgagaaggaaatttgagctgatgcagatggaagatgattagaagatttctgaatacat 31355526  T
Q  265 ctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| ||||| |  ||| |||| ||| ||||||||||||||    
T  31355527 ctctaaactcatcaatcttgtgaattagatgaaggcttgt 31355566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 31358981 - 31359076
Alignment:
Q  338 aagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggca 432  Q
    |||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| |||||||||||||| ||| | |||||||||| |||||||    
T  31358981 aagtttcattttctgagggagcaagtgaacaagggagcactgtagattgttcattgctctactgagctgcagcttgcagacatattcattaaggca 31359076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 37659323 - 37659614
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  37659323 tactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 37659422  T
Q  114 atctcaaaatccacaaagt-ctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    ||||||||||| ||  ||| | ||||| || | ||| |||||   |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  37659423 atctcaaaatc-actgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 37659520  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||| ||||||||||||||||||| || ||||||  ||| |||||||| ||||| | |||| |||| ||||||||||||||||||    
T  37659521 aaggaaatttgaattgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcattaatcttgtgaatcagatgaaggcttgt 37659614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 12019385 - 12019676
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| | || ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  12019385 tactgaggtgcaaaggaacgcacataaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 12019484  T
Q  114 atctcaaaatccacaaagt-ctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    ||||||||||| ||  ||| | ||||| || | ||| |||||   |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  12019485 atctcaaaatc-actgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 12019582  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||| ||||||||||||||||||| || ||||||  ||| |||||||| ||||| | |||| |||| ||||||||||||||||||    
T  12019583 aaggaaatttgaattgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcattaatcttgtgaatcagatgaaggcttgt 12019676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 7103435 - 7103144
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  7103435 tactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 7103336  T
Q  114 atctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    |||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  7103335 atctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 7103238  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  7103237 aaggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 7103144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 16794765 - 16795056
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  16794765 tactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 16794864  T
Q  114 atctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    |||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  16794865 atctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 16794962  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  16794963 aaggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 16795056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 48 - 266
Target Start/End: Original strand, 30047949 - 30048167
Alignment:
Q  48 aagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatccacaaagtctaaggaggctttgg 147  Q
    ||||||||||| ||||| ||| | ||||||||||||||| |||| |||  |||||||||||| | ||| || |   | ||||  || ||||| | |||||    
T  30047949 aagaagaaggattgcaaagcagtgttcttcattcaacaaggtgttgatggaggaaattttgataaaatttctacggctacaagatcaaaggaag-tttgg 30048047  T
Q  148 atattct-gaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagca 246  Q
    ||||||| || | || | ||||||| ||||  |||||||||||||||||||||| |||||||||||| || ||| |  |||||||||||||||| |||||    
T  30048048 atattctagagaaatatcatgaaggagatgagaaggtgaaggagataaagcttcggtctttaagaaggaaatttaagttgatgcaaatggaagaggagca 30048147  T
Q  247 aaagattgttgattacatct 266  Q
    ||||||| ||||||||||||    
T  30048148 aaagattcttgattacatct 30048167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 16598282 - 16598148
Alignment:
Q  166 tgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatc 265  Q
    |||||| ||||  ||||||||| ||||||||||||| |||||| |||| || ||||||  | ||||||||||||||||||| ||||||||||||||||||    
T  16598282 tgaaggagatgaaaaggtgaagtagataaagcttcactctttatgaaggaaatttgaatagttgcaaatggaagatgagcagaagattgttgattacatc 16598183  T
Q  266 tccaaactgaataatgttgtaaatcagatgaaggc 300  Q
    || ||  ||| |||||||| ||||| |||||||||    
T  16598182 tctaagatgattaatgttgaaaatcggatgaaggc 16598148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 30695893 - 30696183
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||| ||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  30695893 actgaagtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 30695992  T
Q  115 tctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaaga 211  Q
    ||||||||| ||| ||| || ||||| || | ||| ||||  | |||| |   |||||||||||| ||| ||||||  ||| |||||||| ||  | |||    
T  30695993 tctcaaaat-cactaagttcaaaggaagcatgggacattctttcaaag-taccatgaaggtgatgataaagtgaagttgattaagcttcaatcactgaga 30696090  T
Q  212 agaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    || || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  30696091 aggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 30696183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 27 - 304
Target Start/End: Complemental strand, 40371295 - 40371017
Alignment:
Q  27 aggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatcca 126  Q
    ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||||||||||||| |    
T  40371295 aggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaaatc-a 40371197  T
Q  127 caaagt-ctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaa 223  Q
    |  ||| | ||||| || | ||| |||||   |||| |   |||||||||||| ||| |||||   ||| |||||||||||  | ||||| || ||||||    
T  40371196 ctgagttcaaaggaagcatgggacattctttcaaag-taccatgaaggtgatgataaagtgaaattgattaagcttcagtcactgagaaggaaatttgaa 40371098  T
Q  224 atgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
     ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  40371097 ctgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 40371017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 12023113 - 12023213
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  12023113 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 12023212  T
Q  432 a 432  Q
    |    
T  12023213 a 12023213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 10275134 - 10275424
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||||||||| ||||| ||| |||| || || |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  10275134 actgaggtgcaaaggaacgcacacaaggagttgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 10275233  T
Q  115 tctcaaaatccacaaagtctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaa 212  Q
    |||||||| |    |  || ||||| || |  || ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||  ||||||    
T  10275234 tctcaaaaacagttagttcaaaggaagcatgagacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactaagaa 10275332  T
Q  213 gaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    | || |||||  ||||||| ||||||||||| || ||||||  ||| |||||||| ||||| |  ||| ||||  |||||||||||||||||    
T  10275333 ggaaatttgagctgatgcagatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgtatcagatgaaggcttgt 10275424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 37681860 - 37681960
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    ||||||||||||||||||| ||||| ||| | ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  37681860 aagcaaagtttcattttctgagggagcaaatgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 37681959  T
Q  432 a 432  Q
    |    
T  37681960 a 37681960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 7099707 - 7099607
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  7099707 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 7099608  T
Q  432 a 432  Q
    |    
T  7099607 a 7099607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 16798493 - 16798593
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  16798493 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 16798592  T
Q  432 a 432  Q
    |    
T  16798593 a 16798593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 10277028 - 10277128
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| |||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| ||||||||||| || ||| | |||||||||||||||||    
T  10277028 aagccaagtttcattttctgagggagcaagtgaacaagggagcactgcagattgttcattgctctactgagctacagcttgcggacatattcactaaggc 10277127  T
Q  432 a 432  Q
    |    
T  10277128 a 10277128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 40367933 - 40367833
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| |||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| |||||| ||||||| ||| | |||||||||||||||||    
T  40367933 aagccaagtttcattttctaagggagcaagtgaacaagggagcactgcagattgttcattgctctactaagctgcagcttgcagacatattcactaaggc 40367834  T
Q  432 a 432  Q
    |    
T  40367833 a 40367833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 15066856 - 15066729
Alignment:
Q  27 aggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatcca 126  Q
    ||||||||  |||||||||| |||||||||||  | |||||  | ||| | |||||||||||| | |||  |||||| ||||||||||| |  |||||||    
T  15066856 aggaatgcgcacaaagaattaaagaagaaggatcgtaaggctttgttcctgattcaacaaagtcttgatgaaggaaactttgaaagaattttgaaatcca 15066757  T
Q  127 caaagtctaaggaggctttggatattct 154  Q
    |||  || ||||| |||| |||||||||    
T  15066756 caagatcaaaggaagcttgggatattct 15066729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 30067058 - 30067103
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctct 378  Q
    ||||||||||||||||||| || |||||||| ||||||| ||||||    
T  30067058 aagcaaagtttcattttctcagagaacaagtgaacaaagaggctct 30067103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 8051488 - 8051779
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  8051488 tactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 8051587  T
Q  114 atctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    |||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  8051588 atctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 8051685  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  8051686 aaggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 8051779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 36671147 - 36671438
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  36671147 tactgaggtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 36671246  T
Q  114 atctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    |||||||||| |||  || || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  36671247 atctcaaaat-cactgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 36671344  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  36671345 aaggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 36671438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 167 - 331
Target Start/End: Original strand, 17256030 - 17256194
Alignment:
Q  167 gaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatct 266  Q
    |||||||||| ||||||||||  ||| |||||||| ||  | || || ||||||||| ||||| | ||||| || ||||| ||||||||||| |||||||    
T  17256030 gaaggtgatgataaggtgaagttgattaagcttcaatcactgaggaggaagtttgaattgatgtagatggaggaggagcataagattgttgagtacatct 17256129  T
Q  267 ccaaactgaataatgttgtaaatcagatgaaggcttgtggggaaacaatttatgatcatcaaatt 331  Q
    ||||||| |  ||| ||   ||||| ||||||||||||||||||  ||||| |||||| ||||||    
T  17256130 ccaaactcatcaatatttggaatcacatgaaggcttgtggggaagtaatttctgatcaacaaatt 17256194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 8055216 - 8055316
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | ||||||||||||||||||||  || | |||||||||||||||||    
T  8055216 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagtttgcagacatattcactaaggc 8055315  T
Q  432 a 432  Q
    |    
T  8055316 a 8055316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 13270588 - 13270298
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||||||||| |||||  || |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  13270588 actgaggtgcaaaggaacacacacaaggaattgaagaagaaagattgcaaggctctgttctttattcaacaaagtcttgatgaaggaaactttgaaagaa 13270489  T
Q  115 tctcaaaatccacaaagtctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaa 212  Q
    | |||||| | |  |  || ||||| || | ||| ||||  | |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||  | ||||    
T  13270488 tatcaaaaacaattagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactgagaa 13270390  T
Q  213 gaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    | || |||||  |||||||||||||||||||  | ||||||  ||| |||||||| ||||| |  ||| |||| |||||| |||||||||||    
T  13270389 ggaaatttgagctgatgcaaatggaagatgattagaagatttctgaatacatctctaaactcatcaatcttgtgaatcaggtgaaggcttgt 13270298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 36674875 - 36674975
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  36674875 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 36674974  T
Q  432 a 432  Q
    |    
T  36674975 a 36674975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 35953941 - 35953862
Alignment:
Q  225 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||| ||||||||||||||    
T  35953941 tgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgaattagatgaaggcttgt 35953862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 35950771 - 35950671
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| |||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| || |||||||| || ||| | |||||||||||||||||    
T  35950771 aagccaagtttcattttctgagggagcaagtgaacaagggagcactgcagattgttcattgctccactgagctacagcttgcagacatattcactaaggc 35950672  T
Q  432 a 432  Q
    |    
T  35950671 a 35950671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 48926 - 48635
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| | || ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  48926 tactgaggtgcaaaggaacgcacataaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 48827  T
Q  114 atctcaaaatccacaaagt-ctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    ||||||||||| ||  ||| | ||||| || | ||| |||||   |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  48826 atctcaaaatc-actgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 48729  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  48728 aaggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 48635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 45198 - 45098
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  45198 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 45099  T
Q  432 a 432  Q
    |    
T  45098 a 45098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 165 - 315
Target Start/End: Original strand, 730356 - 730506
Alignment:
Q  165 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacat 264  Q
    ||||||| |||| ||||||||||  ||| |||||||||||||| ||||| ||||||||| ||||||| ||||| || |||||||| |||| ||| || ||    
T  730356 atgaaggcgatgataaggtgaagttgattaagcttcagtctttgagaaggaagtttgaattgatgcagatggaggaagagcaaaatattgctgaatatat 730455  T
Q  265 ctccaaactgaataatgttgtaaatcagatgaaggcttgtggggaaacaat 315  Q
    ||||||||| |  ||| |||| |||||||||||||||||||| ||| ||||    
T  730456 ctccaaactcatcaatattgtgaatcagatgaaggcttgtggagaagcaat 730506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 7944144 - 7943853
Alignment:
Q  14 tactgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaaga 113  Q
    |||||||||||| ||||| ||| | || ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| |||||||||    
T  7944144 tactgaggtgcaaaggaacgcacaaaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaaga 7944045  T
Q  114 atctcaaaatccacaaagt-ctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaag 210  Q
    ||||||||||| ||  ||| | ||||| || | ||| |||||   |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | ||    
T  7944044 atctcaaaatc-actgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgag 7943947  T
Q  211 aagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||| || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  7943946 aaggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 7943853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 27757494 - 27757780
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||| ||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  27757494 actgaagtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 27757593  T
Q  115 tctcaaaatccacaaag-tctaaggaggctttggatattc--tgaaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaaga 211  Q
    ||||||||| |||  || || ||||| || | ||||||||  | |||| | | |||||||||||| ||| ||||||  ||| || ||||| ||| | |||    
T  27757594 tctcaaaat-cactgagttcaaaggaagcatgggatattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaaacttcaatctctgaga 27757691  T
Q  212 agaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggc 300  Q
    || || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||    
T  27757692 aggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggc 27757780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 432
Target Start/End: Original strand, 27761224 - 27761321
Alignment:
Q  336 caaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggca 432  Q
    |||||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| |||||||||||||| ||| | ||||||||||||||||||    
T  27761224 caaagtttcattttctaagggagcaagtgaacaagggagcactgcagattgttcattgctctactgagctgcagcttgcagacatattcactaaggca 27761321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 7940416 - 7940316
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  7940416 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 7940317  T
Q  432 a 432  Q
    |    
T  7940316 a 7940316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 13828432 - 13828340
Alignment:
Q  338 aagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaag 429  Q
    |||||||||||| | ||||| |||||||||||||| ||  |  ||||| ||||||| || ||||||||||||||| | |||||||||||||||    
T  13828432 aagtttcattttttgagggagcaagtaaacaaaggtgcattgtagattgtccattgctccactgagctgcaacttgcagacatattcactaag 13828340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 729995 - 730024
Alignment:
Q  98 aggaaattttgaaagaatctcaaaatccac 127  Q
    ||||||||||||||||||||||||||||||    
T  729995 aggaaattttgaaagaatctcaaaatccac 730024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 8319564 - 8319274
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||| ||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  8319564 actgaagtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 8319465  T
Q  115 tctcaaaatccacaaagt-ctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaaga 211  Q
    |||||||||| ||  ||| | ||||| || | ||| |||||   |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | |||    
T  8319464 tctcaaaatc-actgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgaga 8319367  T
Q  212 agaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    || || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  8319366 aggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 8319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 21416666 - 21416559
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||||||||| ||||| ||| |||| |||||||||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  21416666 actgaggtgcaaaggaacgcacacaaggaatttaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 21416567  T
Q  115 tctcaaaa 122  Q
    ||||||||    
T  21416566 tctcaaaa 21416559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 304
Target Start/End: Complemental strand, 27571780 - 27571502
Alignment:
Q  27 aggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaatctcaaaatcca 126  Q
    ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||||||||||||      
T  27571780 aggaacgcacacaaggaattgaagaagaaagattgcaaggctctattcttgattcaacaaagtcttgatgaaggaaactttgaaagaatctcaaaatcat 27571681  T
Q  127 caaagtctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaa 224  Q
      |  || ||||| || |  || |||||   |||| | | |||||||||||| ||| |||||   ||| |||||||| ||  | ||||| |||||||||     
T  27571680 tgagttcaaaggaagcatgagacattctttcaaag-tatcatgaaggtgatgataaagtgaaattgattaagcttcaatcactgagaaggaagtttgaac 27571582  T
Q  225 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    |||||||||||||||||||  | ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  27571581 tgatgcaaatggaagatgaatagaagatttctgaatacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 27571502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 304
Target Start/End: Original strand, 23254233 - 23254439
Alignment:
Q  98 aggaaattttgaaagaatctcaaaatccacaaagtctaaggaggctttggatattct-gaaagatgttatgaaggtgatgctaaggtgaaggagataaag 196  Q
    |||||| ||||||||||| | |||||||||||  || ||||| |||| ||||||||| | ||  | | ||| |||||||| ||||||||||  ||| |||    
T  23254233 aggaaactttgaaagaattttaaaatccacaagttcaaaggaagcttaggatattcttgcaaagtatgatggaggtgatgataaggtgaagttgattaag 23254332  T
Q  197 cttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatga 296  Q
    ||| |||| || || || ||||||||| | ||||| ||||| |||||| | ||||||||||| |||||||| ||||| |  ||| |||| ||||| ||||    
T  23254333 ctttagtcattgaggaggaagtttgaatt-atgcagatggaggatgagtagaagattgttgagtacatctctaaacttatcaatattgtgaatcaaatga 23254431  T
Q  297 aggcttgt 304  Q
    ||||||||    
T  23254432 aggcttgt 23254439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 8315837 - 8315737
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | ||||| |||||||||||| | ||| | |||||||||||||||||    
T  8315837 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgatctactgagctgaagcttgcagacatattcactaaggc 8315738  T
Q  432 a 432  Q
    |    
T  8315737 a 8315737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 27552443 - 27552343
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| |||||||||||||| ||||| ||||||||||| || || ||  ||||| | ||||| |||||||||||||| ||| | |||||||||||||||||    
T  27552443 aagccaagtttcattttctaagggagcaagtaaacaagggagcactgcagattgttcattgctctactgagctgcagcttgcagacatattcactaaggc 27552344  T
Q  432 a 432  Q
    |    
T  27552343 a 27552343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 14531365 - 14531265
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||||||||| ||||| ||| |||| ||||| |||||||| || |||||| |  | ||||| |||||||||||| | |||  |||||||||||||||||    
T  14531365 actgaggtgcaaaggaacgcacacaaggaattgaagaagaatgattgcaagactatgttcttgattcaacaaagtcttgatgaaggaaattttgaaagaa 14531266  T
Q  115 t 115  Q
    |    
T  14531265 t 14531265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 17881539 - 17881249
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||| ||||| ||||| ||| | || ||||| | |||||| || ||||||||  | ||||| |||||||||||| | |||  |||||| ||||||||||    
T  17881539 actgatgtgcaaaggaacgcacataaggaattgatgaagaaagattgcaaggctttgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 17881440  T
Q  115 tctcaaaatccacaaagtctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaa 212  Q
    ||||||||||    |  || ||||| || | ||| |||||   |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||  | ||||    
T  17881439 tctcaaaatcattgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactgagaa 17881341  T
Q  213 gaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    | || |||||  |  |||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  17881340 ggaaatttgagctattgcaaatggaagatgatcataagatttatgaatacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 17881249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 411
Target Start/End: Original strand, 3596396 - 3596475
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaactt 411  Q
    |||| |||||||| |||||||||||||||||||||||    ||  | |||||| ||||||||||||||||||||||||||    
T  3596396 aagctaagtttcactttcttagggaacaagtaaacaagcaagcattgaagattgtccattgttctactgagctgcaactt 3596475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 17887167 - 17887078
Alignment:
Q  344 cattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggca 432  Q
    |||||||| ||||| ||||||||||| || || ||  ||||| | ||||| |||||||||||||| ||| | ||||||||||||||||||    
T  17887167 cattttctgagggagcaagtaaacaagggagcactgcagattgttcattgctctactgagctgcagcttgcagacatattcactaaggca 17887078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 39794492 - 39794782
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||| ||||| ||||| ||| |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  39794492 actgaagtgcaaaggaacgcacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 39794591  T
Q  115 tctcaaaatccacaaagt-ctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaaga 211  Q
    |||||||||| ||  ||| | ||||| || | ||| |||||   |||| | | |||||||||||| ||| ||||||  ||| |||||||| ||| | |||    
T  39794592 tctcaaaatc-actgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgaga 39794689  T
Q  212 agaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    || || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  39794690 aggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 39794782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 26312110 - 26312400
Alignment:
Q  15 actgaggtgcagaggaatgcatacaaagaatttaagaagaaggactgcaaggcacttttcttcattcaacaaagtgtagattcaggaaattttgaaagaa 114  Q
    ||||| ||||| |||||  || |||| ||||| |||||||| || |||||||| || ||||| |||||||||||| | |||  |||||| ||||||||||    
T  26312110 actgaagtgcaaaggaacacacacaaggaattgaagaagaaagattgcaaggctctgttcttgattcaacaaagtcttgatgaaggaaactttgaaagaa 26312209  T
Q  115 tctcaaaatccacaaagt-ctaaggaggctttggatattctg--aaagatgttatgaaggtgatgctaaggtgaaggagataaagcttcagtctttaaga 211  Q
    |||||||||| ||  ||| | ||||| || | ||| |||||   |||| | | |||||||||||| ||| ||||||  ||| ||||| || ||| | |||    
T  26312210 tctcaaaatc-actgagttcaaaggaagcatgggacattctttcaaag-tatcatgaaggtgatgataaagtgaagttgattaagctccaatctctgaga 26312307  T
Q  212 agaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    || || |||||  ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  26312308 aggaaatttgagctgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 26312400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 26315837 - 26315937
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  26315837 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 26315936  T
Q  432 a 432  Q
    |    
T  26315937 a 26315937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 401
Target Start/End: Original strand, 30647189 - 30647258
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactga 401  Q
    |||||||||| |||||||||||||||||  ||| |||||| ||||||||| || |||||||||| |||||    
T  30647189 aagcaaagttccattttcttagggaacagttaaccaaaggagctctaaaggttgtccattgttccactga 30647258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 43592155 - 43592054
Alignment:
Q  332 aaagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaagg 430  Q
    ||||| ||||| |||||| | ||||| ||||| ||||| || |||||  ||||| | ||||| ||||||||||| |||||| | ||||||||||||||||    
T  43592155 aaagctaagttccattttatgagggaccaagtgaacaagggagctctgtagattgttcattgctctactgagctacaacttgcagacatattcactaagg 43592056  T
Q  431 ca 432  Q
    ||    
T  43592055 ca 43592054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 7330 - 7430
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||| | ||| | |||||||||||||||||    
T  7330 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgtagcttgcagacatattcactaaggc 7429  T
Q  432 a 432  Q
    |    
T  7430 a 7430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 2804 - 2904
Alignment:
Q  333 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 431  Q
    |||||||||| |||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||| | ||| | |||||||||||||||||    
T  2804 aagcaaagttacattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgaagcttgcagacatattcactaaggc 2903  T
Q  432 a 432  Q
    |    
T  2904 a 2904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 54325 - 54223
Alignment:
Q  165 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacat 264  Q
    ||||||||||||  ||||||||| |||| |||||||| ||||| || || || ||| || ||||  ||||||||||  | || |||||||||||||||||    
T  54325 atgaaggtgatgaaaaggtgaagcagatcaagcttcaatctttgaggaggaaatttcaactgatataaatggaagaatatcataagattgttgattacat 54226  T
Q  265 ctc 267  Q
    |||    
T  54225 ctc 54223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 304
Target Start/End: Complemental strand, 64686 - 64547
Alignment:
Q  165 atgaaggtgatgctaaggtgaaggagataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacat 264  Q
    |||||||||||| |||||||||   ||| |||||||| ||  | || || || |||||  ||||||| ||||||||||| || ||||||  ||| |||||    
T  64686 atgaaggtgatgataaggtgaaattgattaagcttcaatcactgaggaggaaatttgagctgatgcagatggaagatgatcagaagatttctgaatacat 64587  T
Q  265 ctccaaactgaataatgttgtaaatcagatgaaggcttgt 304  Q
    ||||||||  |  ||| |||| ||||| ||||||||||||    
T  64586 ctccaaacccatcaatcttgtgaatcaaatgaaggcttgt 64547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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