View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_low_15 (Length: 455)
Name: NF19975_low_15
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 2240561 - 2240180
Alignment:
| Q |
11 |
cataggtaccttatagccattcgccaaccaaccattaacctaaaaatatgaattcacattgtccgggacttatttggagaaactcaaacgaggatcaaat |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2240561 |
cataggcaccttatagccattcgccaaccaaccattaacctaaaaatatgaattcacattgtccgggacttatttggagaaactcaaacgaggatcaaat |
2240462 |
T |
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| Q |
111 |
atttaattaagacagtcgtgtataaagattcttaaacagtcacttagggagtcatccaatttatttaatattttttagattcttagataatcacgtaagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2240461 |
atttaattaagacagtcgtgtataaagattcttaaacagtcacttagggagtcatccaatttatttaatattttttagattcttagataatcacttaagt |
2240362 |
T |
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| Q |
211 |
taacgtgatcccaaagtttcacataaaagtagaactagaacaatgtaaacgtggtaatagcattgtggaaggaaggaatatattcgaacttaaagctcca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2240361 |
taacgtgatcccaaagtttcacataaaagtagaactagaacaatgtaaacgcggtaatagcattgtggaaggaaggaatatattcgaacttaaagctcca |
2240262 |
T |
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| Q |
311 |
actattactaacccaaaatgctaagacaggtaaggtaccataatataattcccactcatgtgatgtgagtggtttttagact |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2240261 |
actattactaacccaaaatgctaagacaggtaaggtaccataatataattcccactcatgtgatgtgagtggtttttagact |
2240180 |
T |
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