View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19975_low_17 (Length: 443)

Name: NF19975_low_17
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19975_low_17
NF19975_low_17
[»] chr5 (3 HSPs)
chr5 (17-438)||(10254934-10255355)
chr5 (32-432)||(10239256-10239656)
chr5 (17-433)||(10230475-10230891)


Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 10254934 - 10255355
Alignment:
Q  17 gcttcacgccattacaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaactt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10254934 gcttcacgccattacaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaactt 10255033  T
Q  117 atcccaaacgtgttttctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgcagcacgtgtcatatctggacaatacaatccttcta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255034 atcccaaacgtgttttctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgcagcacgtgtcatatctggacaatacaatccttcta 10255133  T
Q  217 acggcattggtttagccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttccttatgaaatcaatcttacgccaaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255134 acggcattggtttagccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttccttatgaaatcaatcttacgccaaa 10255233  T
Q  317 cggtgatatccaaacaattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattgacggcgacacaggtgaaactttt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255234 cggtgatatccaaacaattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattgacggcgacacaggtgaaactttt 10255333  T
Q  417 gctttccgttacggtcctatgc 438  Q
    ||||||||||||||||||||||    
T  10255334 gctttccgttacggtcctatgc 10255355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 32 - 432
Target Start/End: Complemental strand, 10239656 - 10239256
Alignment:
Q  32 aatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaacttatcccaaacgtgttt 131  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  10239656 aatcacaaacggaaaagccacactatgtagccgttacgttcaaacctataaatacaaaatcgaaaacgaagctggttaccaaattctcccaaacgtgttt 10239557  T
Q  132 tctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgcagcacgtgtcatatctggacaatacaatccttctaacggcattggtttag 231  Q
    |||||||||||||||||||| | ||  || |||||||| || ||  | | |||||||||  || |||| || || |||||   |||||||||||| ||      
T  10239556 tctggtttcaactcgcttattggtttagcggcacgtggatccgtggctgtagcacgtgtgttaactggtcagtataatccaattaacggcattggattga 10239457  T
Q  232 ccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttccttatgaaatcaatcttacgccaaacggtgatatccaaac 331  Q
     |||||||||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  10239456 tcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatcagatcttccttatgaaatcaaagttacaccaaacggtgatatccaaac 10239357  T
Q  332 aattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattgacggcgacacaggtgaaacttttgctttccgttacggt 431  Q
    ||| |||||||||||||||||||| ||||||| ||||| |||||| || ||||| |||||||||  |||||||||||||  ||| |||| ||| ||||||    
T  10239356 aataggccgttatgattttaacggcaaactcttcatgaatatgacggcgcatcctaaaattgactccgacacaggtgaatgtttcgcttaccgctacggt 10239257  T
Q  432 c 432  Q
    |    
T  10239256 c 10239256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 17 - 433
Target Start/End: Complemental strand, 10230891 - 10230475
Alignment:
Q  17 gcttcacgccattacaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaactt 116  Q
    |||||| |||||||||||||||||||| ||||| ||||| ||||||||||| ||  |||| ||||| |||||||| |||||| |||||||| ||||||||    
T  10230891 gcttcatgccattacaatctcaaacgggaaagccacactatgtagccgttatgtaaaaacctacaagtacaaaattgaaaacaaagctggtcaccaactt 10230792  T
Q  117 atcccaaacgtgttttctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgcagcacgtgtcatatctggacaatacaatccttcta 216  Q
    ||||||||||||||||||||||||||||||||||| ||||  || |||||||| || ||    | |||||| ||  || | || || || || || ||||    
T  10230791 atcccaaacgtgttttctggtttcaactcgcttattgctttagcggcacgtggatccgtggttgtagcacgggtgttaaccggtcagtataacccatcta 10230692  T
Q  217 acggcattggtttagccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttccttatgaaatcaatcttacgccaaa 316  Q
    |||||||||| || | |||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||| |||| || || |||||    
T  10230691 acggcattggattggtcaacacaagtttagctctgtttggtaaccgtctttttgctttaggagaatcagatcttccttatgaagtcaaactaacaccaaa 10230592  T
Q  317 cggtgatatccaaacaattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattgacggcgacacaggtgaaactttt 416  Q
    |||||| ||||||||||| |||||||||||||| ||||| |||||||  ||||||||||| || ||||| ||||| |||   |||||| |||||  |||     
T  10230591 cggtgacatccaaacaatgggccgttatgatttcaacggcaaactcttgatgagtatgacggcgcatcctaaaatagactctgacacaagtgaatgtttc 10230492  T
Q  417 gctttccgttacggtcc 433  Q
    ||||||||||| |||||    
T  10230491 gctttccgttatggtcc 10230475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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