View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19975_low_20 (Length: 419)

Name: NF19975_low_20
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19975_low_20
NF19975_low_20
[»] chr5 (3 HSPs)
chr5 (1-351)||(36275181-36275531)
chr5 (352-402)||(36275874-36275924)
chr5 (82-157)||(26907058-26907133)
[»] chr8 (2 HSPs)
chr8 (80-224)||(13334200-13334344)
chr8 (81-220)||(30541459-30541598)
[»] chr4 (1 HSPs)
chr4 (84-215)||(40449215-40449346)
[»] chr7 (1 HSPs)
chr7 (82-220)||(23690892-23691030)
[»] chr2 (2 HSPs)
chr2 (81-174)||(10725152-10725245)
chr2 (58-106)||(27000942-27000990)
[»] chr6 (1 HSPs)
chr6 (58-227)||(34702863-34703031)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 36275181 - 36275531
Alignment:
Q  1 tcaaaaacagatgatccacatcctcgtgagatctgtagccgtctgaccaaaaatgagtatttggttgaagtatcattcacctgattaagttgtcagttgt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  36275181 tcaaaaacagatgatccacatcctcgtgagatctgcagccgtcagaccaaaaatgagtatttggttgaactatcattcacctgattaagttgtcggttgt 36275280  T
Q  101 tggaagactattacgtaataaactacaaacaaagatgttgacttttaaagaaacctctttatgcaaaataattgtaacgtgatctttatttagaggttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  36275281 tggaagactattacgtaataaactacaaacaaagatgttgacttttaaagaaacctctttatgcaaaataattgtaacgtggtctttgtttagaggttga 36275380  T
Q  201 tcccttaatgtcaaataattgtaaacagatgatccatctcccaccttccgtcataagtgatcgttaaaccaactatcaacccctcttgagcgcctccctt 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36275381 tcccttgatgtcaaataattgtaaacagatgatccatctcccaccttccgtcataagtgatcgttaaaccaactatcaacccctcttgagcgcctccctt 36275480  T
Q  301 gataacattagaggtttcaagattatagtggaatctgttgatgatattgct 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36275481 gataacattagaggtttcaagattatagtggaatctgttgatgatattgct 36275531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 402
Target Start/End: Original strand, 36275874 - 36275924
Alignment:
Q  352 aaatgattctcgaattaaactaccgcaattcgtggaactagtggcagtatt 402  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36275874 aaatgattctcgaattaaactaccgcaatttgtggaactagtggcagtatt 36275924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 26907133 - 26907058
Alignment:
Q  82 tgattaagttgtcagttgttggaagactattacgtaataaactacaaacaaagatgttgacttttaaagaaacctc 157  Q
    ||||||||||||||||| ||| |||||  |||||||||||||  ||||  ||||||||||||||||||| ||||||    
T  26907133 tgattaagttgtcagttattgaaagacggttacgtaataaacgtcaaatgaagatgttgacttttaaaggaacctc 26907058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 13334344 - 13334200
Alignment:
Q  80 cctgattaagttgtcagttgttggaagactattacgtaataaactacaaacaaagatgttgacttttaaagaaacctctttatgcaaaataattgtaacg 179  Q
    |||||||||||||||||||||||||||||  |||||||||||||  ||| | ||||||||||||||| ||| |||||| || | | ||||| | |||  |    
T  13334344 cctgattaagttgtcagttgttggaagacagttacgtaataaacgtcaagcgaagatgttgacttttgaaggaacctcattgtaccaaatagtagtattg 13334245  T
Q  180 tgatctttatttagaggttgatcccttaatgtcaaataattgtaa 224  Q
    ||||| || |||| ||||||||||||| |||| ||| | ||||||    
T  13334244 tgatcattgtttaaaggttgatcccttgatgttaaaaagttgtaa 13334200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 30541598 - 30541459
Alignment:
Q  81 ctgattaagttgtcagttgttggaagactattacgtaataaactacaaacaaagatgttgacttttaaagaaacctctttatgcaaaataattgtaacgt 180  Q
    ||||||||| |||||||||||| || || ||||| || |||||  |||   ||||| ||||||||||||  |||||| |||| | ||| |||||||  ||    
T  30541598 ctgattaagctgtcagttgttgaaaaacaattacatattaaacatcaagtgaagatattgacttttaaaagaacctccttataccaaacaattgtagtgt 30541499  T
Q  181 gatctttatttagaggttgatcccttaatgtcaaataatt 220  Q
    | || || |||| | ||||||| ||| |||||||||||||    
T  30541498 ggtcgttgtttaaatgttgatcacttgatgtcaaataatt 30541459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 40449215 - 40449346
Alignment:
Q  84 attaagttgtcagttgttggaagactattacgtaataaactacaaacaaagatgttgacttttaaagaaacctctttatgcaaaataattgtaacgtgat 183  Q
    |||| |||||||||||||||||||| ||||| ||||||||  | ||| ||||||||||||||||||| |||||  || ||| ||||||| |||   ||||    
T  40449215 attaggttgtcagttgttggaagacgattacataataaacgtccaacgaagatgttgacttttaaaggaaccttcttgtgccaaataatagtattttgat 40449314  T
Q  184 ctttatttagaggttgatcccttaatgtcaaa 215  Q
    | || |||| ||||||||||||| ||||||||    
T  40449315 cattgtttaaaggttgatcccttgatgtcaaa 40449346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 220
Target Start/End: Original strand, 23690892 - 23691030
Alignment:
Q  82 tgattaagttgtcagttgttggaagactattacgtaataaactacaaacaaagatgttgacttttaaagaaacctctttatgcaaaataattgtaacgtg 181  Q
    ||||||||||||||||||||||||||   ||||||||||||   ||| |||| |||||||||||||||| |||||  || ||| ||||||| |||  |||    
T  23690892 tgattaagttgtcagttgttggaagatgtttacgtaataaatgccaagcaaaaatgttgacttttaaaggaaccttcttgtgccaaataatagtattgtg 23690991  T
Q  182 atctttatttagaggttgatcccttaatgtcaaataatt 220  Q
    ||| || |||| || |||||||||| |||||||| ||||    
T  23690992 atcattgtttaaagattgatcccttgatgtcaaaaaatt 23691030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 10725152 - 10725245
Alignment:
Q  81 ctgattaagttgtcagttgttggaagactattacgtaataaactacaaacaaagatgttgacttttaaagaaacctctttatgcaaaataattg 174  Q
    |||||||||||||  ||||||||||| | |||||| |||||||  ||| | || ||||||||||||| || |||||| |||||| |||||||||    
T  10725152 ctgattaagttgtatgttgttggaagtcgattacgcaataaacggcaagcgaaaatgttgacttttagaggaacctccttatgccaaataattg 10725245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 27000990 - 27000942
Alignment:
Q  58 tatttggttgaagtatcattcacctgattaagttgtcagttgttggaag 106  Q
    ||||||||||||| ||| ||  |||||||||||| ||||||||||||||    
T  27000990 tatttggttgaaggatcctttgcctgattaagttatcagttgttggaag 27000942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 34703031 - 34702863
Alignment:
Q  58 tatttggttgaagtatcattcacctgattaagttgtcagttgttggaagactattacgtaataaactacaaacaaagatgttgacttttaaagaaacctc 157  Q
    ||||||||||||| ||| ||  |||||||||||| |||||||||||||| |  || || || | ||  ||| |||| ||||| || |||| || ||||||    
T  34703031 tatttggttgaaggatcctttgcctgattaagttatcagttgttggaaggcagtttcgcaaaagacgccaagcaaatatgttaacctttagaggaacctc 34702932  T
Q  158 tttatgcaaaataattgtaacgtgatctttatttagaggttgatcccttaatgtcaaataattgtaaaca 227  Q
     || ||| ||||||| | |  || ||| || ||| |||||| ||||||| |||||||| |||||||||||    
T  34702931 -ttgtgccaaataatagaattgtcatcattgtttggaggttaatcccttgatgtcaaaaaattgtaaaca 34702863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University