View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_low_23 (Length: 371)
Name: NF19975_low_23
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 12541048 - 12541275
Alignment:
| Q |
18 |
ataataatttggtgctagctgtacaatacagaaatagtgatggatgttgcaaaggaaggacagaaggagctactt---gcctattgaatattctagatta |
114 |
Q |
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| T |
12541048 |
ataataatatgggtctagctgtaccatattgaaataaggatggatccttcaaaggaaggacggaaggagctacgtcctgccggtggaatattgtagatta |
12541147 |
T |
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| Q |
115 |
catgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctatagctttgcttccaagtgtgtgtactggaaaataataatgttt |
214 |
Q |
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| T |
12541148 |
catgctttctagttttttaatttaaggaccatgcttctgcttttactttcacttctacatctttgcttccaagtgtgtgcactgcaaaataataatg-ct |
12541246 |
T |
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| Q |
215 |
taattaatgctattctaatttgatcatgt |
243 |
Q |
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| T |
12541247 |
taattaatgtaattctaatttgttcatgt |
12541275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 12535092 - 12534973
Alignment:
| Q |
100 |
gaatattctagattacatgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttcta----tagctttgcttccaagtgtgtgta |
195 |
Q |
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| T |
12535092 |
gaatattgtagactacttgctttctagttttctaattaaaggactatgcttctgtttttactcgcatttctatatgtaagtttgcttccaagtgtgtgca |
12534993 |
T |
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| Q |
196 |
ctggaaaataataatgtttt |
215 |
Q |
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| T |
12534992 |
ctagaaaataacgatgtttt |
12534973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 12541275 - 12541340
Alignment:
| Q |
292 |
tgtttcttgttttatattttctcttcaataatgccttatgattgtcttgacttgtgacatattctt |
357 |
Q |
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| T |
12541275 |
tgtttcttgttttatattttctctttgattatgccttatcattgtcttgccttgtgacattttctt |
12541340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 47569740 - 47569791
Alignment:
| Q |
108 |
tagattacatgctttctagttttctaatttaaggaccatgcttctgctttta |
159 |
Q |
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| T |
47569740 |
tagattacatgctttctagttttctaatttaaggactatgtttttgctttta |
47569791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 28239767 - 28239831
Alignment:
| Q |
108 |
tagattacatgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctat |
172 |
Q |
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| T |
28239767 |
tagattacatgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttctat |
28239831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 12531979 - 12531936
Alignment:
| Q |
225 |
tattctaatttgatcatgtctgcgtatttggcccatatatgttc |
268 |
Q |
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| T |
12531979 |
tattctaatttgatcgtgtctgcgtatttggccgatatatgttc |
12531936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 14508432 - 14508386
Alignment:
| Q |
112 |
ttacatgctttctagttttctaatttaaggaccatgcttctgctttt |
158 |
Q |
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| T |
14508432 |
ttacatgctttctatttttctaattaaaggactatgcttttgctttt |
14508386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 384193 - 384134
Alignment:
| Q |
115 |
catgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctatag |
174 |
Q |
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| T |
384193 |
catgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctatag |
384134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 16375795 - 16375837
Alignment:
| Q |
108 |
tagattacatgctttctagttttctaatttaaggaccatgctt |
150 |
Q |
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| T |
16375795 |
tagattacatgctttgtagttttctaattaaaggatcatgctt |
16375837 |
T |
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