View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19975_low_3 (Length: 663)

Name: NF19975_low_3
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19975_low_3
NF19975_low_3
[»] chr1 (1 HSPs)
chr1 (11-663)||(44973529-44974178)


Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 11 - 663
Target Start/End: Original strand, 44973529 - 44974178
Alignment:
Q  11 caagaaaataatgagttgttaaataaaatgtatatcatttttgcatttataaacacaaaaggctcacggactatatatataagtgctgattgcttgtaat 110  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  44973529 caagaaaataatgagttgttaaataaaatgtatatgattgttgcatttataaacacaaaaggctcacggactatata----agtgctgattgcttgtaat 44973624  T
Q  111 acagtataattccatgataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973625 acagtataattccatgataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttat 44973724  T
Q  211 catccacaccaacgttatacattcc-aacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttag 309  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973725 catccacaccaacgttatactctcccaacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttag 44973824  T
Q  310 ctatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaactccatcat 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44973825 ctatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaacaccatcat 44973924  T
Q  410 tgcaccatttctcttcttcaaacattgtacaccaannnnnnnaaactacatcctcaaagatgtttccctcacagcatacccttctgagattcttgccatt 509  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973925 tgcaccatttctcttcttcaaacattgtacaccaacccccccaaactacatcctcaaagatgtttccctcacagcatacccttctgagattcttgccatt 44974024  T
Q  510 gttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacactttcccttaactcttcacctatca 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44974025 gttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacactttctcttaactcttcacctatca 44974124  T
Q  610 ctaacccttccacattcagaaaactctctgcttatgttcctcaacatgatgcat 663  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44974125 ctaacccttctacattcagaaaactctctgcttatgttcctcaacatgatgcat 44974178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University