View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_low_30 (Length: 306)
Name: NF19975_low_30
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 3928883 - 3929033
Alignment:
| Q |
19 |
cattcctcatgtcgccagtgctgattttcttgtggccattgtatggtgatatattattgaaatagtgcaagttttagttttgaaagtgattgacttgaaa |
118 |
Q |
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| T |
3928883 |
cattcctcctgtcgccagtgctgattttcttgtggccattgtatggtgatatattattgaaatagtgcaagttttagttttgaaagtgattgacttgaaa |
3928982 |
T |
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| Q |
119 |
tctgg--tagtgtatacagttttgatagtcgattctggaactggtagagca |
167 |
Q |
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| T |
3928983 |
tctggtatagtgtatacagttttgatagtcgattctggaactggtagagca |
3929033 |
T |
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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 3929038 - 3929131
Alignment:
| Q |
211 |
ggtaactttataccaagactgtcataatattttaacatctataactcattttgatggtactgttatattgataggaagctctagaatataggga |
304 |
Q |
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| T |
3929038 |
ggtaactttataccaagactgtcataatattttaacatctataactcattttgatggtactgttatattgatagtaagctctagaatataggga |
3929131 |
T |
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