View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_low_32 (Length: 286)
Name: NF19975_low_32
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 3416341 - 3416085
Alignment:
| Q |
20 |
tcaatttgatcttcaacataatttagcttatcaactctttctgactcaaaaagaggcacgatctagaatacttctacaatctctcatcaagaaacaaata |
119 |
Q |
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| T |
3416341 |
tcaatttgatcttcaacataatttagcttatcaactctttctgactcaaaaagaggcacgatctagaatacttctacaatctctcatcaagaaacaaata |
3416242 |
T |
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| Q |
120 |
atgaattttattagtatcacatattctctctccatccaacatcatatacactttggtttt---gagattacacccatgtatcagccatcacttttattat |
216 |
Q |
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| T |
3416241 |
atgaattttattagtatcacatattctctctccatccaacatcatatacactttggttttgaggagattacacccatgtatcagccatcacttttattat |
3416142 |
T |
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| Q |
217 |
aatttcatcaccaatcgttcatct---acaaccatgtaaaagcacatgtctagaatt |
270 |
Q |
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| T |
3416141 |
aatttcatcaccaatcgttcatctacaacaaccatgtaaaagcacatgtctagaatt |
3416085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 46889120 - 46889168
Alignment:
| Q |
222 |
catcaccaatcgttcatctacaaccatgtaaaagcacatgtctagaatt |
270 |
Q |
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| T |
46889120 |
catcaccaatcctccatctacaagcatgtgaaaacacatgtctagaatt |
46889168 |
T |
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