View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19975_low_33 (Length: 256)

Name: NF19975_low_33
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19975_low_33
NF19975_low_33
[»] chr1 (7 HSPs)
chr1 (1-241)||(47636446-47636686)
chr1 (40-178)||(47287585-47287723)
chr1 (72-178)||(47574592-47574698)
chr1 (72-150)||(47607328-47607406)
chr1 (148-213)||(47568239-47568304)
chr1 (75-232)||(47711620-47711777)
chr1 (48-196)||(6497761-6497909)
[»] chr4 (4 HSPs)
chr4 (69-145)||(36290572-36290648)
chr4 (122-208)||(36376261-36376347)
chr4 (122-208)||(36429306-36429392)
chr4 (143-199)||(36389512-36389568)
[»] chr2 (4 HSPs)
chr2 (72-118)||(2712576-2712622)
chr2 (72-118)||(2717100-2717146)
chr2 (72-118)||(2723722-2723768)
chr2 (72-148)||(2698501-2698577)
[»] chr5 (3 HSPs)
chr5 (68-145)||(454539-454616)
chr5 (159-196)||(28419879-28419916)
chr5 (159-196)||(28433112-28433149)
[»] chr3 (1 HSPs)
chr3 (109-214)||(36067108-36067213)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 47636686 - 47636446
Alignment:
Q  1 aaacatgtacttactatgtgcctacgattctactggtatttccttgagtttgatccactccgaataattttgccatgccaaagtccgagatttttggatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636686 aaacatgtacttactatgtgcctacgattctactggtatttccttgagtttgatccactccgaataattttgccatgccaaagtccgagatttttggatt 47636587  T
Q  101 catatctccatccaacaatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47636586 catatctccatccaacaatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgcgcaatccct 47636487  T
Q  201 ccaataatcttgtaacgccttgtccaatccaacagcctttg 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47636486 ccaataatcttgtaacgccttgtccaatccaacagcctttg 47636446  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 47287723 - 47287585
Alignment:
Q  40 ttccttgagtttgatccactccgaataattttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatc 139  Q
    ||||| |||||||||| || || |||| | ||||||| ||||| || || ||||| ||||| | ||   |||| || ||||| || ||||||||||||||    
T  47287723 ttcctcgagtttgatcaacaccaaatattcttgccatcccaaaatctgaaattttgggatttaaattctcatctaataatatattactagctttaagatc 47287624  T
Q  140 acgatgaataattttaagcctagaatcttcatgaagata 178  Q
     ||||| || ||| |||| | ||||||||| ||||||||    
T  47287623 gcgatgtatgattctaagtcgagaatcttcgtgaagata 47287585  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 47574698 - 47574592
Alignment:
Q  72 gccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcat 171  Q
    ||||||||||| || || ||||||||||||||||  ||||| ||||  |  | ||||| ||| ||||||||||| || ||||| || | |||||||||||    
T  47574698 gccatgccaaaatctgatatttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatgattttgaggcgagaatcttcat 47574599  T
Q  172 gaagata 178  Q
    | |||||    
T  47574598 ggagata 47574592  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 47607406 - 47607328
Alignment:
Q  72 gccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatgaataa 150  Q
    ||||||||||| || |||||||| |||||||||| | |||| || || || || |||| ||||||||||||||| ||||    
T  47607406 gccatgccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataa 47607328  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 47568304 - 47568239
Alignment:
Q  148 taattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataatcttgt 213  Q
    |||||||||| |  ||||| ||||| |||||  |||| ||||||||||| ||||||||||||||||    
T  47568304 taattttaaggcgtgaatcctcatggagataaagaattcctcgagcaattcctccaataatcttgt 47568239  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 47711620 - 47711777
Alignment:
Q  75 atgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaa 174  Q
    ||||||||||| || ||||| |||||||  | | ||||||| |  ||||| || ||||||||||||||||| |||||   |||   |||||| |||||||    
T  47711620 atgccaaagtctgatattttaggattcaacttttcatccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctcatgaa 47711719  T
Q  175 gatattgaatgcctcgagcaatccctccaataatcttgtaacgccttgtccaatccaa 232  Q
    | ||  ||| ||||| ||| || |||||||| || ||||| ||||||  |||||||||    
T  47711720 ggtaaagaaggcctctagctatacctccaatgattttgtagcgcctttcccaatccaa 47711777  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 6497761 - 6497909
Alignment:
Q  48 gtttgatccactccgaataattttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatgaa 147  Q
    ||||| ||||| || |||| | ||||||||||||| || || || || |||||||| ||| |||| || |  ||||| || ||||| |||||||||||||    
T  6497761 gtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttacttgctttgagatcacgatgaa 6497860  T
Q  148 taattttaagcctagaatcttcatgaagatattgaatgcctcgagcaat 196  Q
    ||||    || | |||||| || ||||| ||  ||||||||||||||||    
T  6497861 taatgcgcagtcgagaatcctcgtgaaggtaaagaatgcctcgagcaat 6497909  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 36290648 - 36290572
Alignment:
Q  69 tttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatg 145  Q
    ||||||| ||||||||| || |||||||||||||||| | |||||||||| |||||||| ||||| ||||| |||||    
T  36290648 tttgccaagccaaagtctgaaatttttggattcatattttcatccaacaaaatgttgcttgcttttagatctcgatg 36290572  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 36376347 - 36376261
Alignment:
Q  122 gttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataat 208  Q
    |||||| ||||| ||||| | |||||| ||||| ||||| ||||||| ||||||||||  ||  |||||||||||||| | ||||||    
T  36376347 gttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat 36376261  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 36429392 - 36429306
Alignment:
Q  122 gttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataat 208  Q
    |||||| ||||| ||||| | |||||| ||||| ||||| ||||||| ||||||||||  ||  |||||||||||||| | ||||||    
T  36429392 gttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat 36429306  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 36389568 - 36389512
Alignment:
Q  143 atgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccc 199  Q
    |||||| ||||| ||||| ||||||| ||||||||||  || |||||||||||||||    
T  36389568 atgaatgattttcagccttgaatcttgatgaagatataaaacgcctcgagcaatccc 36389512  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 2712576 - 2712622
Alignment:
Q  72 gccatgccaaagtccgagatttttggattcatatctccatccaacaa 118  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||    
T  2712576 gccatgccaaagtcagatatttttggattcatttctccatccaacaa 2712622  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 2717100 - 2717146
Alignment:
Q  72 gccatgccaaagtccgagatttttggattcatatctccatccaacaa 118  Q
    |||||||||||||| || |||||||||||||  ||||||||||||||    
T  2717100 gccatgccaaagtcggatatttttggattcagttctccatccaacaa 2717146  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 2723722 - 2723768
Alignment:
Q  72 gccatgccaaagtccgagatttttggattcatatctccatccaacaa 118  Q
    |||||||||||||| || |||||||||||||  ||||||||||||||    
T  2723722 gccatgccaaagtcggatatttttggattcagttctccatccaacaa 2723768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 2698501 - 2698577
Alignment:
Q  72 gccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatgaat 148  Q
    |||| ||||||||| || |||||||||||||| | | |||| ||||| ||||| || ||||| ||||| ||||||||    
T  2698501 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttgcttttagatctcgatgaat 2698577  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 454539 - 454616
Alignment:
Q  68 ttttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatg 145  Q
    ||||||||| |||||||| || ||||||||||||||||    ||| |||||||| ||||||| ||| |||||||||||    
T  454539 ttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatg 454616  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 28419916 - 28419879
Alignment:
Q  159 ctagaatcttcatgaagatattgaatgcctcgagcaat 196  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  28419916 ctagaatcttgatgaagatattgaattcctcgagcaat 28419879  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 28433149 - 28433112
Alignment:
Q  159 ctagaatcttcatgaagatattgaatgcctcgagcaat 196  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  28433149 ctagaatcttgatgaagatattgaattcctcgagcaat 28433112  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 214
Target Start/End: Original strand, 36067108 - 36067213
Alignment:
Q  109 catccaacaatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataat 208  Q
    |||||||||| |||||||| | |||||||||||  || || ||||| ||   |||||| ||||| |||||  |||| ||||| ||||||||||  |||||    
T  36067108 catccaacaaaatgttgctgggtttaagatcacagtgtatgatttttagatgagaatcctcatgtagataaagaatacctcgtgcaatccctcttataat 36067207  T
Q  209 cttgta 214  Q
    ||||||    
T  36067208 cttgta 36067213  T

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