View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19975_low_4 (Length: 646)

Name: NF19975_low_4
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19975_low_4
NF19975_low_4
[»] chr8 (1 HSPs)
chr8 (1-633)||(41869989-41870622)


Alignment Details
Target: chr8 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Complemental strand, 41870622 - 41869989
Alignment:
Q  1 gtattacatcaattttgttgccatcgttccagggaattaatggtgcagttagagatgatacactgttacagctaacagttcctacaatgtttgtccaggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41870622 gtattacatcaattttgttgccatcgttccagggaattaatggtgcagttagagatgatacactgttacagctaacagttcctacaatgtttgtccaggt 41870523  T
Q  101 aaagttctctttttctaatttgtcattgcagtatgttatagttttgtagtcatacctcctcagtttcaaacacttagtctattggatgaaccatgctttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41870522 aaagttctctttttctaatttgtcattgcagtatgttatagttttgtagtcatacctcctcagtttcaaacacttagtctattggatgaaccatgctttt 41870423  T
Q  201 annnnnnn-gatagtgtttcatcaggagaatattctgtaatgcacataaattttttggtttacgctaacgtctctcctaatgctagtcttgtgtgtgtct 299  Q
             ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41870422 tttttttttgatagtgttccatcaggagaatattctgtaatgcacataaattttttggtttacgctaacgtctctcctaatgctagtcttgtgtgtgtct 41870323  T
Q  300 tgagcagggcagcaaggatggtctatgtccacttgagaagttagagaccactcggaagaagatgaaagcgctcaatgagctgcatgtcattgatggtggt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41870322 tgagcagggcagcaaggatggtctatgtccacttgagaagttagagaccactcggaagaagatgaaagcgctcaatgagctgcatgtcattgatggtggt 41870223  T
Q  400 gatcactcttttaagattggtaaaaagcatctgcaagcaaacggttccactcaggatgaagccgaagttgctgctgtgaaggccattgctgctttcattt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41870222 gatcactcttttaagattggtaaaaagcatctgcaagcaaacggttccactcaggatgaagccgaagttgctgctgtgaaggccattgctgctttcattt 41870123  T
Q  500 ccaaatctcttgaaggatgatgatgcccccatcttaagtcgattctagtgtacggaggttcgtatatacactttgttgtatctagcttagcagtaatcta 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41870122 ccaaatctcttgaaggatgatgatgcccccatcttaagtcgattctagtgtacggaggttcgtatatacactttgttgtatctagcttagtagtaatcta 41870023  T
Q  600 ggccctgttcttgccagttggctgtagttatatt 633  Q
    ||||||||||||||||||||||||||||||||||    
T  41870022 ggccctgttcttgccagttggctgtagttatatt 41869989  T

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