View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19975_low_5 (Length: 631)
Name: NF19975_low_5
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 19 - 617
Target Start/End: Original strand, 54302387 - 54302985
Alignment:
| Q |
19 |
caaatgggattgaaagagagctgtacaaatgattaactagctcataactcataatgagcatttggactttgaattttattgtttatgtataattgaattc |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54302387 |
caaatgggactgaaagagagctgtacaaatgattaactagttcataactcataatgagcatttggactttgaattttattgtttatgtataattgaattc |
54302486 |
T |
|
| Q |
119 |
ctggcaaaatttttggacagtgaactatatacaatttagataataaaacattatccctcctaatttttcaaaccactaatccatatatataaggtagagt |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54302487 |
ctggcaaaaaatttggacagtgaactatatacaatttagataataaaacattatccctcctaatttttcaaaccactaatccatatatataaggtagagt |
54302586 |
T |
|
| Q |
219 |
gtacacaattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttcagaaatgtctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54302587 |
gtacacaattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttaagaaatgtctt |
54302686 |
T |
|
| Q |
319 |
catcatttgatgcactccaaaaacaatcagctgccgtagtgataatatagacttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54302687 |
catcatttgatgcactccaaaaacaatcagctgccgtagtgataatatggacttcaatacctcttaaagccaaatgatccgcaacaaattctctaatctg |
54302786 |
T |
|
| Q |
419 |
cagacaatttcaatgtaaagaaagagttaacacgatggcaactttagagcttgacattttgaaaaaagtaaagggtgatttcagaatnnnnnnngataaa |
518 |
Q |
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| T |
54302787 |
cagacaatttgaatgtaaagaaagagctaacactatggcaactttagagcttgacattctgaaaaaagtaaagggtgatttcagaataaaaaaagataaa |
54302886 |
T |
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| Q |
519 |
cctgtatatatggagcaccgttcgccactttatacatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccgcgttcatctc |
617 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54302887 |
cctgtatatatggagcatcgttcgccactttatatatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccacgttcatctc |
54302985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 54307791 - 54307890
Alignment:
| Q |
19 |
caaatgggattgaaagagagctgtacaaatgattaactagctcataactcataatgagcatttggactttgaattttattgtttatgtataattgaattc |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |
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| T |
54307791 |
caaatgggactgaaagagagctgtacaaatgattaactagttcataactcataatgagcatttggactttgaattttgttgtttatgtacaattaaattc |
54307890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
371 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
424 |
Q |
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|||||||||||||| |||| || ||||||||||| ||||||||||||||||| |
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| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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