View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19975_low_9 (Length: 522)
Name: NF19975_low_9
Description: NF19975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19975_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 17351034 - 17351528
Alignment:
| Q |
19 |
atcaatatctgcccaatgatgtgcattttctcaacctgttgaatggttgaacaatatgagatctttagttgttatgcaggaatagtggtatatgtactcg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17351034 |
atcaatatctgcccaatgatgtgcattttctcaacctgttgaatggtcgaacaatatgagatccttagttgttatgcaagaatagtggtatatgtactcg |
17351133 |
T |
|
| Q |
119 |
tgtctataggcacaatacattaacatagtaaaaaa-tgatcatttcacctctaccacccttctgcttcccacatgatgagaacataaattactgttttag |
217 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17351134 |
tgtctataggcacaatacactagcatagtaaaaaaatgatcctttcacctctaccacccttctgcttcccacaggatgagaacataaattactgttttag |
17351233 |
T |
|
| Q |
218 |
ttgttagagaatgatcttatatgaaacaaa-ggatccataatatgaagatacaaaaaccaaaacttttttctattagatgggataaatcacatggatcaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17351234 |
ttgttagagaatgatcttatatgaaacaaatggatccataatatgaagatacaaaaaccaaaacttttttctattagatgagataaatcacatggatcaa |
17351333 |
T |
|
| Q |
317 |
acaatgatatattgtcctatcataaattatatacaatgacataccatgtacatctaccatgtgtgctcaccctgattttgagttgttaaaatactatact |
416 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17351334 |
acgatgatatattgtcctatcataaattatatgcaatgacataccatttacatctaccatgtgtgctcaccctgattttgagttgttaaaatactatact |
17351433 |
T |
|
| Q |
417 |
cttgttcgattagtcgaatctagcaacacaaatttctctcttcttgatccttccacaatatacctctatggacaccccatgacacactttttcat |
511 |
Q |
| |
|
| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17351434 |
cgtcttcgattagtcgaatctagtaacacaaatttctctcttcttgatccttccacaatatacctctatggacaccctatgacacactttttcat |
17351528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University